MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.4 nTPM
HPA Brain:30.7 nTPM
GTEx:2.4 nTPM
FANTOM5:26.5 Scaled Tags Per Million
Pig:11.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.9
2586 Male, age 75, left hemisphere 31.0
1870 Female, age 42, unknown 30.3
1830 Male, age 51, unknown 28.7
2828 Female, age 72, unknown 28.2
2411 Female, age 72, unknown 27.7
1833 Male, age 53, unknown 25.0
2019 Male, age 18, unknown 24.1
1827 Male, age 72, unknown 20.7
2666 Male, age 74, left hemisphere 19.5
2219 Male, age 76, both hemispheres 13.5
Dorsal raphe nucleus
nTPM: 26.4
2750 Male, age 76, both hemispheres 30.5
2016 Female, age 72, unknown 29.4
1828 Male, age 53, unknown 25.6
2047 Male, age 72, unknown 23.4
2298 Female, age 72, unknown 23.1
Inferior colliculus
nTPM: 25.0
2849 Male, age 72, unknown 26.5
1890 Male, age 53, unknown 26.2
1848 Female, age 42, unknown 23.9
2097 Female, age 72, unknown 23.1
Median raphe nucleus
nTPM: 30.7
2220 Male, age 76, midline 30.7
Periaquaductal grey, anterior
nTPM: 27.9
1947 Male, age 18, unknown 31.9
2502 Female, age 75, unknown 29.1
1795 Male, age 51, unknown 22.6
Periaquaductal grey, dorsal
nTPM: 25.0
1831 Male, age 72, unknown 29.5
2850 Male, age 76, both hemispheres 26.7
1840 Male, age 53, unknown 22.8
2464 Female, age 72, unknown 21.2
Periaquaductal grey, lateral
nTPM: 27.7
2053 Male, age 18, unknown 32.2
2272 Male, age 74, both hemispheres 27.9
2140 Male, age 76, both hemispheres 23.0
Pretectal area
nTPM: 26.3
2273 Male, age 74, both hemispheres 35.8
2407 Male, age 75, both hemispheres 31.7
2667 Female, age 75, unknown 31.6
2316 Male, age 76, right hemisphere 28.6
2224 Female, age 72, unknown 26.6
2825 Male, age 18, unknown 25.5
1815 Male, age 53, unknown 24.8
1816 Male, age 51, unknown 23.6
1944 Female, age 72, unknown 21.9
1817 Female, age 42, unknown 21.3
2007 Male, age 72, unknown 17.6
Red nucleus
nTPM: 24.7
1821 Female, age 72, unknown 28.1
2503 Female, age 72, unknown 27.1
2227 Male, age 72, unknown 26.9
2725 Female, age 75, unknown 26.0
2769 Male, age 72, unknown 25.4
2584 Male, age 75, left hemisphere 25.3
1865 Male, age 51, unknown 25.1
1954 Female, age 42, unknown 24.6
1904 Male, age 53, unknown 22.7
2785 Male, age 18, unknown 22.2
2823 Male, age 76, right hemisphere 21.8
2588 Male, age 74, left hemisphere 21.5
Substantia nigra
nTPM: 17.8
2583 Male, age 75, right hemisphere 23.9
1889 Female, age 72, unknown 22.9
1941 Male, age 53, unknown 21.2
1851 Male, age 51, unknown 19.0
2241 Male, age 72, unknown 16.6
2665 Male, age 74, both hemispheres 16.4
1916 Female, age 42, unknown 16.1
2590 Female, age 75, unknown 16.0
2699 Male, age 18, unknown 14.6
2409 Female, age 72, unknown 11.3
Superior colliculus
nTPM: 28.8
1913 Female, age 42, unknown 42.4
1995 Male, age 72, unknown 39.4
2664 Male, age 75, both hemispheres 34.6
2261 Male, age 18, unknown 27.8
2587 Male, age 74, left hemisphere 27.4
2087 Female, age 72, unknown 25.9
1839 Male, age 51, unknown 24.7
1796 Male, age 53, unknown 24.2
2668 Female, age 75, unknown 22.3
1895 Male, age 76, right hemisphere 19.6
Ventral tegmental area
nTPM: 29.4
2223 Female, age 72, unknown 40.8
1942 Male, age 51, unknown 33.1
2021 Male, age 53, unknown 32.0
2218 Male, age 76, both hemispheres 25.2
1915 Female, age 42, unknown 23.1
2410 Female, age 72, unknown 22.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.4
Samples: 139

Max nTPM: 10.0
Min nTPM: 0.0
Std nTPM: 1.5
Median nTPM: 2.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 10.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 8.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 7.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 5.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 5.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 5.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 5.1
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 4.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 4.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 4.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 4.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.5
FF:10158-103A5 76 years, female 26.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.4
Samples: 4

Max nTPM: 13.8
Min nTPM: 9.3
Sample A Female 12.7
Sample B Female 9.6
Sample C Male 9.3
Sample D Male 13.8
Midbrain
nTPM: 9.7
Samples: 4

Max nTPM: 14.8
Min nTPM: 6.7
Sample A Female 14.8
Sample B Female 6.7
Sample C Male 6.9
Sample D Male 10.2
Periaqueductal gray
nTPM: 10.1
Samples: 3

Max nTPM: 12.8
Min nTPM: 7.4
Sample B Female 7.4
Sample C Male 12.8
Sample D Male 10.2
Superior colliculi
nTPM: 8.4
Samples: 4

Max nTPM: 10.9
Min nTPM: 6.3
Sample A Female 10.9
Sample B Female 7.4
Sample C Male 6.3
Sample D Male 8.9

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