HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:18.2 nTPM
HPA Brain:7.2 nTPM
GTEx:18.2 nTPM
FANTOM5:24.7 Scaled Tags Per Million
Pig:14.2 nTPM
Mouse:25.0 nTPM
Allen mouse:2.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA007989
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 7.2
Sample id Sample description nTPM
Hippocampus
nTPM: 6.1
1898 Male, age 80, left hemisphere 7.7
2529 Female, age 94, left hemisphere 7.3
2621 Female, age 67, right hemisphere 5.9
1911 Female, age 85, right hemisphere 5.4
1855 Male, age 76, left hemisphere 5.2
2148 Female, age 91, left hemisphere 4.9
Dentate gyrus
nTPM: 6.4
2010 Male, age 76, both hemispheres 7.6
2528 Male, age 74, both hemispheres 6.9
2530 Female, age 94, left hemisphere 6.5
1927 Female, age 91, both hemispheres 6.0
2531 Female, age 67, both hemispheres 5.8
2246 Female, age 85, both hemispheres 5.7
Entorhinal gyrus
nTPM: 6.1
2686 Male, age 75, right hemisphere 7.2
2117 Female, age 91, right hemisphere 7.0
1938 Female, age 85, left hemisphere 6.0
2613 Female, age 94, left hemisphere 5.8
2764 Male, age 80, right hemisphere 5.7
1787 Male, age 76, left hemisphere 4.6
Hippocampus, CA1
nTPM: 6.9
2527 Male, age 74, both hemispheres 7.9
2749 Male, age 80, left hemisphere 7.2
1873 Female, age 85, both hemispheres 6.5
2082 Female, age 91, right hemisphere 6.5
2045 Male, age 76, both hemispheres 6.3
Hippocampus, CA2
nTPM: 7.2
1940 Female, age 85, left hemisphere 8.8
1963 Male, age 80, left hemisphere 7.5
2249 Male, age 74, both hemispheres 7.5
1892 Male, age 76, both hemispheres 7.0
2437 Female, age 94, left hemisphere 6.3
2113 Female, age 91, right hemisphere 6.1
Hippocampus, CA3
nTPM: 6.3
2436 Male, age 74, both hemispheres 7.8
1891 Female, age 85, both hemispheres 6.9
1867 Male, age 76, both hemispheres 6.2
2620 Female, age 94, left hemisphere 6.1
2137 Male, age 80, left hemisphere 5.4
2861 Female, age 67, both hemispheres 5.2
Parahippocampal cortex
nTPM: 6.2
2693 Female, age 94, both hemispheres 7.2
1933 Female, age 85, both hemispheres 6.8
2245 Female, age 91, both hemispheres 6.6
2018 Male, age 76, both hemispheres 6.4
2692 Male, age 74, both hemispheres 6.4
1850 Male, age 80, both hemispheres 6.2
2250 Female, age 67, right hemisphere 6.1
1990 Female, age 91, right hemisphere 5.9
2532 Female, age 72, left hemisphere 5.9
2622 Female, age 67, right hemisphere 4.5
Perirhinal gyrus
nTPM: 6.2
1847 Female, age 91, left hemisphere 7.4
1794 Male, age 80, right hemisphere 6.7
2521 Female, age 94, right hemisphere 6.2
1841 Female, age 85, right hemisphere 5.7
2848 Male, age 76, right hemisphere 5.2
Subiculum
nTPM: 6.3
2042 Male, age 76, both hemispheres 7.5
2729 Female, age 91, right hemisphere 7.0
2619 Male, age 74, both hemispheres 6.6
1977 Female, age 85, both hemispheres 6.4
2438 Female, age 94, left hemisphere 5.8
1901 Male, age 80, both hemispheres 4.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.2
Samples: 197

Max nTPM: 34.5
Min nTPM: 8.6
Std nTPM: 4.8
Median nTPM: 17.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 34.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 32.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 32.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 32.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 31.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 30.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 30.5
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 29.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 29.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 29.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 28.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 24.7
FF:10169-103B7 60 years, female 28.0
FF:10153-102I9 76 years, female 21.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 14.2
Pig sample Sample description nTPM
Subiculum
nTPM: 13.0
Samples: 4

Max nTPM: 13.8
Min nTPM: 11.4
Sample A Female 13.4
Sample B Female 13.2
Sample C Male 11.4
Sample D Male 13.8
Dorsal hippocampus
nTPM: 14.2
Samples: 4

Max nTPM: 16.7
Min nTPM: 12.5
Sample A Female 16.7
Sample B Female 14.6
Sample C Male 13.0
Sample D Male 12.5
Entorhinal cortex
nTPM: 12.5
Samples: 4

Max nTPM: 15.0
Min nTPM: 9.9
Sample A Female 13.0
Sample B Female 15.0
Sample C Male 12.2
Sample D Male 9.9
Ventral hippocampus
nTPM: 13.1
Samples: 4

Max nTPM: 14.4
Min nTPM: 11.2
Sample A Female 14.1
Sample B Female 11.2
Sample C Male 12.6
Sample D Male 14.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 25.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 22.2
Samples: 4

Max nTPM: 23.7
Min nTPM: 21.1
Sample A Male 21.6
Sample B Male 22.5
Sample C Female 23.7
Sample D Female 21.1
Hippocampal formation
nTPM: 25.0
Samples: 4

Max nTPM: 29.4
Min nTPM: 22.2
Sample A Male 29.4
Sample B Male 24.7
Sample C Female 22.2
Sample D Female 23.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.4
75774105 Antisense, RP_060530_01_B01, Mouse strain C57BL/6J (56 days, male) 2.4
75774636 Antisense, RP_060530_01_B01, Mouse strain C57BL/6J (56 days, male) 2.3

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