MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.2 nTPM
HPA Brain:13.2 nTPM
GTEx:4.2 nTPM
FANTOM5:10.2 Scaled Tags Per Million
Pig:9.5 nTPM
Mouse:3.8 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.6
2019 Male, age 18, unknown 14.8
2411 Female, age 72, unknown 13.1
2586 Male, age 75, left hemisphere 12.9
1827 Male, age 72, unknown 12.7
1830 Male, age 51, unknown 12.7
1833 Male, age 53, unknown 12.2
2666 Male, age 74, left hemisphere 12.1
2828 Female, age 72, unknown 12.0
1870 Female, age 42, unknown 11.8
2219 Male, age 76, both hemispheres 11.4
Dorsal raphe nucleus
nTPM: 11.2
2298 Female, age 72, unknown 12.6
2016 Female, age 72, unknown 12.3
1828 Male, age 53, unknown 10.7
2750 Male, age 76, both hemispheres 10.7
2047 Male, age 72, unknown 9.7
Inferior colliculus
nTPM: 10.9
2097 Female, age 72, unknown 13.0
1890 Male, age 53, unknown 10.8
2849 Male, age 72, unknown 10.0
1848 Female, age 42, unknown 9.6
Median raphe nucleus
nTPM: 11.0
2220 Male, age 76, midline 11.0
Periaquaductal grey, anterior
nTPM: 10.5
2502 Female, age 75, unknown 11.4
1795 Male, age 51, unknown 11.1
1947 Male, age 18, unknown 9.0
Periaquaductal grey, dorsal
nTPM: 11.7
1831 Male, age 72, unknown 13.6
2850 Male, age 76, both hemispheres 11.6
2464 Female, age 72, unknown 11.3
1840 Male, age 53, unknown 10.2
Periaquaductal grey, lateral
nTPM: 12.4
2053 Male, age 18, unknown 12.9
2140 Male, age 76, both hemispheres 12.5
2272 Male, age 74, both hemispheres 11.7
Pretectal area
nTPM: 13.1
2407 Male, age 75, both hemispheres 15.1
1815 Male, age 53, unknown 14.2
1817 Female, age 42, unknown 14.2
2007 Male, age 72, unknown 13.4
2224 Female, age 72, unknown 13.2
2273 Male, age 74, both hemispheres 13.2
1816 Male, age 51, unknown 13.1
1944 Female, age 72, unknown 12.6
2316 Male, age 76, right hemisphere 12.5
2667 Female, age 75, unknown 11.5
2825 Male, age 18, unknown 10.9
Red nucleus
nTPM: 12.6
2584 Male, age 75, left hemisphere 15.4
2785 Male, age 18, unknown 14.9
1904 Male, age 53, unknown 13.5
2503 Female, age 72, unknown 12.6
1821 Female, age 72, unknown 12.4
1865 Male, age 51, unknown 12.3
1954 Female, age 42, unknown 12.1
2725 Female, age 75, unknown 12.1
2227 Male, age 72, unknown 12.0
2769 Male, age 72, unknown 11.6
2823 Male, age 76, right hemisphere 11.5
2588 Male, age 74, left hemisphere 11.0
Substantia nigra
nTPM: 11.8
2583 Male, age 75, right hemisphere 16.4
2665 Male, age 74, both hemispheres 14.4
2590 Female, age 75, unknown 12.4
1889 Female, age 72, unknown 12.3
2241 Male, age 72, unknown 12.1
1851 Male, age 51, unknown 11.3
1941 Male, age 53, unknown 10.8
2699 Male, age 18, unknown 10.3
1916 Female, age 42, unknown 8.8
2409 Female, age 72, unknown 8.7
Superior colliculus
nTPM: 13.2
1913 Female, age 42, unknown 15.1
1995 Male, age 72, unknown 14.3
2664 Male, age 75, both hemispheres 14.2
2261 Male, age 18, unknown 13.8
2087 Female, age 72, unknown 13.7
2668 Female, age 75, unknown 13.2
1796 Male, age 53, unknown 12.7
2587 Male, age 74, left hemisphere 12.7
1839 Male, age 51, unknown 11.3
1895 Male, age 76, right hemisphere 10.4
Ventral tegmental area
nTPM: 12.2
2021 Male, age 53, unknown 13.9
1942 Male, age 51, unknown 13.5
2223 Female, age 72, unknown 12.8
2218 Male, age 76, both hemispheres 11.5
2410 Female, age 72, unknown 11.1
1915 Female, age 42, unknown 10.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.2
Samples: 139

Max nTPM: 10.1
Min nTPM: 1.8
Std nTPM: 1.3
Median nTPM: 4.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 10.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 7.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 7.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 7.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 7.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 7.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 7.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 6.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 6.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 6.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 6.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.2
FF:10158-103A5 76 years, female 10.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.6
Samples: 4

Max nTPM: 12.5
Min nTPM: 6.3
Sample A Female 12.5
Sample B Female 7.5
Sample C Male 11.9
Sample D Male 6.3
Midbrain
nTPM: 7.7
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.8
Sample A Female 6.8
Sample B Female 7.9
Sample C Male 8.2
Sample D Male 7.9
Periaqueductal gray
nTPM: 7.3
Samples: 3

Max nTPM: 8.5
Min nTPM: 6.5
Sample B Female 6.5
Sample C Male 8.5
Sample D Male 7.0
Superior colliculi
nTPM: 6.3
Samples: 4

Max nTPM: 7.3
Min nTPM: 4.7
Sample A Female 7.3
Sample B Female 4.7
Sample C Male 6.3
Sample D Male 6.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.8
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.2
Sample A Male 3.3
Sample B Male 4.2
Sample C Female 3.2
Sample D Female 4.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
68745275 Antisense, RP_050210_01_F02, Mouse strain C57BL/6J (56 days, male) 3.1

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