MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.6 nTPM
HPA Brain:48.4 nTPM
GTEx:5.6 nTPM
FANTOM5:45.6 Scaled Tags Per Million
Pig:33.9 nTPM
Mouse:27.1 nTPM
Allen mouse:3.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.8
1830 Male, age 51, unknown 48.0
2019 Male, age 18, unknown 47.0
1833 Male, age 53, unknown 46.3
1870 Female, age 42, unknown 46.0
2411 Female, age 72, unknown 45.2
2666 Male, age 74, left hemisphere 45.1
1827 Male, age 72, unknown 45.0
2219 Male, age 76, both hemispheres 44.6
2586 Male, age 75, left hemisphere 42.1
2828 Female, age 72, unknown 38.6
Dorsal raphe nucleus
nTPM: 41.6
2047 Male, age 72, unknown 43.5
2750 Male, age 76, both hemispheres 43.5
1828 Male, age 53, unknown 41.9
2016 Female, age 72, unknown 40.7
2298 Female, age 72, unknown 38.3
Inferior colliculus
nTPM: 44.6
1848 Female, age 42, unknown 46.4
1890 Male, age 53, unknown 45.2
2849 Male, age 72, unknown 44.2
2097 Female, age 72, unknown 42.8
Median raphe nucleus
nTPM: 42.0
2220 Male, age 76, midline 42.0
Periaquaductal grey, anterior
nTPM: 42.8
1947 Male, age 18, unknown 48.5
2502 Female, age 75, unknown 44.0
1795 Male, age 51, unknown 36.0
Periaquaductal grey, dorsal
nTPM: 43.8
2464 Female, age 72, unknown 45.3
1840 Male, age 53, unknown 45.0
1831 Male, age 72, unknown 43.3
2850 Male, age 76, both hemispheres 41.7
Periaquaductal grey, lateral
nTPM: 39.7
2140 Male, age 76, both hemispheres 40.6
2053 Male, age 18, unknown 40.3
2272 Male, age 74, both hemispheres 38.3
Pretectal area
nTPM: 43.9
1817 Female, age 42, unknown 51.1
2007 Male, age 72, unknown 50.3
1815 Male, age 53, unknown 49.2
1816 Male, age 51, unknown 48.2
1944 Female, age 72, unknown 47.9
2407 Male, age 75, both hemispheres 42.2
2825 Male, age 18, unknown 42.0
2667 Female, age 75, unknown 41.6
2316 Male, age 76, right hemisphere 38.4
2224 Female, age 72, unknown 37.6
2273 Male, age 74, both hemispheres 34.4
Red nucleus
nTPM: 48.4
2588 Male, age 74, left hemisphere 56.0
2503 Female, age 72, unknown 54.8
1821 Female, age 72, unknown 51.9
1865 Male, age 51, unknown 51.5
1954 Female, age 42, unknown 49.4
1904 Male, age 53, unknown 48.7
2725 Female, age 75, unknown 46.8
2227 Male, age 72, unknown 45.2
2785 Male, age 18, unknown 44.9
2823 Male, age 76, right hemisphere 44.8
2769 Male, age 72, unknown 43.8
2584 Male, age 75, left hemisphere 42.9
Substantia nigra
nTPM: 47.8
2409 Female, age 72, unknown 57.3
1889 Female, age 72, unknown 49.7
2241 Male, age 72, unknown 48.7
2583 Male, age 75, right hemisphere 48.1
1851 Male, age 51, unknown 46.9
2590 Female, age 75, unknown 45.8
1941 Male, age 53, unknown 45.7
2699 Male, age 18, unknown 45.5
2665 Male, age 74, both hemispheres 45.3
1916 Female, age 42, unknown 44.9
Superior colliculus
nTPM: 43.4
1895 Male, age 76, right hemisphere 48.1
2668 Female, age 75, unknown 47.0
2587 Male, age 74, left hemisphere 44.5
1839 Male, age 51, unknown 44.3
1913 Female, age 42, unknown 43.1
2087 Female, age 72, unknown 42.1
1995 Male, age 72, unknown 41.9
2261 Male, age 18, unknown 41.6
2664 Male, age 75, both hemispheres 41.1
1796 Male, age 53, unknown 40.2
Ventral tegmental area
nTPM: 42.8
2410 Female, age 72, unknown 48.5
2223 Female, age 72, unknown 44.3
2218 Male, age 76, both hemispheres 44.2
1915 Female, age 42, unknown 41.8
1942 Male, age 51, unknown 39.4
2021 Male, age 53, unknown 38.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.6
Samples: 139

Max nTPM: 10.7
Min nTPM: 1.9
Std nTPM: 1.7
Median nTPM: 5.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 10.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 10.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 9.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 9.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 9.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 8.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 8.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 8.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 8.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 8.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 8.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.6
FF:10158-103A5 76 years, female 45.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.1
Samples: 4

Max nTPM: 31.5
Min nTPM: 27.9
Sample A Female 29.4
Sample B Female 27.9
Sample C Male 31.5
Sample D Male 31.4
Midbrain
nTPM: 33.9
Samples: 4

Max nTPM: 39.0
Min nTPM: 30.4
Sample A Female 34.7
Sample B Female 30.4
Sample C Male 39.0
Sample D Male 31.5
Periaqueductal gray
nTPM: 28.1
Samples: 3

Max nTPM: 29.9
Min nTPM: 24.9
Sample B Female 29.9
Sample C Male 29.4
Sample D Male 24.9
Superior colliculi
nTPM: 33.8
Samples: 4

Max nTPM: 37.6
Min nTPM: 31.8
Sample A Female 31.8
Sample B Female 32.2
Sample C Male 37.6
Sample D Male 33.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.1
Samples: 4

Max nTPM: 30.0
Min nTPM: 25.5
Sample A Male 25.5
Sample B Male 30.0
Sample C Female 27.3
Sample D Female 25.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.7
69290812 Antisense, RP_050407_04_G06, Mouse strain C57BL/6J (56 days, male) 4.3
73925714 Antisense, RP_051214_03_A12, Mouse strain C57BL/6J (56 days, male) 3.1

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