HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:34.6 nTPM
HPA Brain:198.4 nTPM
GTEx:34.6 nTPM
FANTOM5:511.2 Scaled Tags Per Million
Pig:429.3 nTPM
Mouse:408.4 nTPM
Allen mouse:2.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA023309Antibody HPA029524
Glial cells LowHigh
Neuronal cells LowLow




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 198.4
Sample id Sample description nTPM
Hippocampus
nTPM: 168.0
1898 Male, age 80, left hemisphere 201.5
1911 Female, age 85, right hemisphere 184.8
2529 Female, age 94, left hemisphere 181.2
1855 Male, age 76, left hemisphere 155.0
2621 Female, age 67, right hemisphere 150.3
2148 Female, age 91, left hemisphere 135.3
Dentate gyrus
nTPM: 157.9
2010 Male, age 76, both hemispheres 204.4
2530 Female, age 94, left hemisphere 176.9
1927 Female, age 91, both hemispheres 152.0
2246 Female, age 85, both hemispheres 149.8
2528 Male, age 74, both hemispheres 134.1
2531 Female, age 67, both hemispheres 130.6
Entorhinal gyrus
nTPM: 189.4
2117 Female, age 91, right hemisphere 228.4
2686 Male, age 75, right hemisphere 208.7
1938 Female, age 85, left hemisphere 202.4
2613 Female, age 94, left hemisphere 176.4
1787 Male, age 76, left hemisphere 172.0
2764 Male, age 80, right hemisphere 148.2
Hippocampus, CA1
nTPM: 151.9
2749 Male, age 80, left hemisphere 161.6
2527 Male, age 74, both hemispheres 159.8
1873 Female, age 85, both hemispheres 157.6
2082 Female, age 91, right hemisphere 149.6
2045 Male, age 76, both hemispheres 130.8
Hippocampus, CA2
nTPM: 166.4
1963 Male, age 80, left hemisphere 184.1
1892 Male, age 76, both hemispheres 182.1
1940 Female, age 85, left hemisphere 164.4
2249 Male, age 74, both hemispheres 157.1
2113 Female, age 91, right hemisphere 157.0
2437 Female, age 94, left hemisphere 153.5
Hippocampus, CA3
nTPM: 151.1
1891 Female, age 85, both hemispheres 212.2
1867 Male, age 76, both hemispheres 207.2
2137 Male, age 80, left hemisphere 155.8
2436 Male, age 74, both hemispheres 135.8
2861 Female, age 67, both hemispheres 111.9
2620 Female, age 94, left hemisphere 84.1
Parahippocampal cortex
nTPM: 197.6
2532 Female, age 72, left hemisphere 232.6
2692 Male, age 74, both hemispheres 223.7
1990 Female, age 91, right hemisphere 218.7
1850 Male, age 80, both hemispheres 214.2
1933 Female, age 85, both hemispheres 201.9
2622 Female, age 67, right hemisphere 187.5
2018 Male, age 76, both hemispheres 181.7
2693 Female, age 94, both hemispheres 177.1
2245 Female, age 91, both hemispheres 176.7
2250 Female, age 67, right hemisphere 162.1
Perirhinal gyrus
nTPM: 188.1
2521 Female, age 94, right hemisphere 204.7
1841 Female, age 85, right hemisphere 199.6
1847 Female, age 91, left hemisphere 181.8
2848 Male, age 76, right hemisphere 181.7
1794 Male, age 80, right hemisphere 172.9
Subiculum
nTPM: 198.4
2438 Female, age 94, left hemisphere 227.9
1901 Male, age 80, both hemispheres 223.8
2042 Male, age 76, both hemispheres 209.4
1977 Female, age 85, both hemispheres 195.0
2619 Male, age 74, both hemispheres 180.3
2729 Female, age 91, right hemisphere 153.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 34.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 34.6
Samples: 197

Max nTPM: 83.2
Min nTPM: 10.7
Std nTPM: 12.3
Median nTPM: 33.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 83.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 72.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 71.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 68.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 66.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 64.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 64.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 59.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 57.8
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 57.2
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 56.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 511.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 511.2
FF:10153-102I9 76 years, female 543.6
FF:10169-103B7 60 years, female 478.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 429.3
Pig sample Sample description nTPM
Subiculum
nTPM: 348.4
Samples: 4

Max nTPM: 422.9
Min nTPM: 284.6
Sample A Female 422.9
Sample B Female 321.3
Sample C Male 284.6
Sample D Male 364.8
Dorsal hippocampus
nTPM: 429.3
Samples: 4

Max nTPM: 560.4
Min nTPM: 268.9
Sample A Female 560.4
Sample B Female 366.6
Sample C Male 521.3
Sample D Male 268.9
Entorhinal cortex
nTPM: 382.1
Samples: 4

Max nTPM: 475.8
Min nTPM: 341.0
Sample A Female 360.4
Sample B Female 475.8
Sample C Male 351.1
Sample D Male 341.0
Ventral hippocampus
nTPM: 321.9
Samples: 4

Max nTPM: 385.9
Min nTPM: 253.9
Sample A Female 372.6
Sample B Female 275.1
Sample C Male 253.9
Sample D Male 385.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 408.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 408.4
Samples: 4

Max nTPM: 460.0
Min nTPM: 373.0
Sample A Male 399.1
Sample B Male 460.0
Sample C Female 401.6
Sample D Female 373.0
Hippocampal formation
nTPM: 334.1
Samples: 4

Max nTPM: 404.0
Min nTPM: 299.9
Sample A Male 404.0
Sample B Male 299.9
Sample C Female 310.3
Sample D Female 322.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.8
961 Antisense, RP_Baylor_103391, Mouse strain C57BL/6J (56 days, male) 2.8
962 Antisense, RP_Baylor_103391, Mouse strain C57BL/6J (56 days, male) 1.9

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