MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.4 nTPM
HPA Brain:233.6 nTPM
GTEx:30.4 nTPM
FANTOM5:620.3 Scaled Tags Per Million
Pig:529.2 nTPM
Mouse:355.3 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 233.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 202.0
1870 Female, age 42, unknown 241.3
1830 Male, age 51, unknown 228.8
1833 Male, age 53, unknown 220.3
2586 Male, age 75, left hemisphere 216.9
2019 Male, age 18, unknown 216.8
2411 Female, age 72, unknown 210.2
2666 Male, age 74, left hemisphere 200.3
2219 Male, age 76, both hemispheres 169.9
1827 Male, age 72, unknown 159.6
2828 Female, age 72, unknown 156.2
Dorsal raphe nucleus
nTPM: 154.1
2750 Male, age 76, both hemispheres 204.4
2016 Female, age 72, unknown 173.5
1828 Male, age 53, unknown 154.7
2047 Male, age 72, unknown 135.9
2298 Female, age 72, unknown 102.1
Inferior colliculus
nTPM: 160.4
1848 Female, age 42, unknown 174.2
1890 Male, age 53, unknown 162.9
2849 Male, age 72, unknown 154.4
2097 Female, age 72, unknown 150.2
Median raphe nucleus
nTPM: 157.7
2220 Male, age 76, midline 157.7
Periaquaductal grey, anterior
nTPM: 170.9
2502 Female, age 75, unknown 212.1
1947 Male, age 18, unknown 175.5
1795 Male, age 51, unknown 125.1
Periaquaductal grey, dorsal
nTPM: 151.0
2464 Female, age 72, unknown 179.9
2850 Male, age 76, both hemispheres 153.4
1840 Male, age 53, unknown 136.1
1831 Male, age 72, unknown 134.7
Periaquaductal grey, lateral
nTPM: 139.2
2053 Male, age 18, unknown 158.5
2140 Male, age 76, both hemispheres 138.7
2272 Male, age 74, both hemispheres 120.3
Pretectal area
nTPM: 173.5
1815 Male, age 53, unknown 223.8
2007 Male, age 72, unknown 211.3
1817 Female, age 42, unknown 201.2
2316 Male, age 76, right hemisphere 187.9
1944 Female, age 72, unknown 185.9
2407 Male, age 75, both hemispheres 184.6
1816 Male, age 51, unknown 178.9
2825 Male, age 18, unknown 152.3
2667 Female, age 75, unknown 132.2
2224 Female, age 72, unknown 127.7
2273 Male, age 74, both hemispheres 122.3
Red nucleus
nTPM: 233.6
1821 Female, age 72, unknown 281.5
2503 Female, age 72, unknown 280.2
1904 Male, age 53, unknown 255.8
1865 Male, age 51, unknown 242.7
1954 Female, age 42, unknown 240.4
2588 Male, age 74, left hemisphere 239.6
2785 Male, age 18, unknown 229.6
2823 Male, age 76, right hemisphere 220.3
2769 Male, age 72, unknown 219.9
2227 Male, age 72, unknown 215.9
2725 Female, age 75, unknown 204.5
2584 Male, age 75, left hemisphere 172.2
Substantia nigra
nTPM: 182.1
2409 Female, age 72, unknown 226.2
2241 Male, age 72, unknown 226.0
1889 Female, age 72, unknown 203.4
1851 Male, age 51, unknown 192.9
2583 Male, age 75, right hemisphere 184.3
2590 Female, age 75, unknown 176.1
2699 Male, age 18, unknown 166.1
1941 Male, age 53, unknown 157.2
1916 Female, age 42, unknown 144.8
2665 Male, age 74, both hemispheres 143.8
Superior colliculus
nTPM: 190.1
1913 Female, age 42, unknown 249.1
2668 Female, age 75, unknown 220.2
1995 Male, age 72, unknown 217.4
1895 Male, age 76, right hemisphere 191.9
1839 Male, age 51, unknown 188.0
2587 Male, age 74, left hemisphere 181.0
2261 Male, age 18, unknown 175.7
2087 Female, age 72, unknown 168.6
2664 Male, age 75, both hemispheres 156.0
1796 Male, age 53, unknown 152.9
Ventral tegmental area
nTPM: 166.7
2223 Female, age 72, unknown 186.3
2410 Female, age 72, unknown 183.9
1915 Female, age 42, unknown 168.6
1942 Male, age 51, unknown 163.9
2021 Male, age 53, unknown 153.4
2218 Male, age 76, both hemispheres 144.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.4
Samples: 139

Max nTPM: 112.4
Min nTPM: 11.9
Std nTPM: 14.1
Median nTPM: 28.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 112.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 63.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 62.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 62.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 61.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 60.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 60.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 59.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 57.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 54.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 52.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 620.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 620.3
FF:10158-103A5 76 years, female 620.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 529.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 503.6
Samples: 4

Max nTPM: 635.4
Min nTPM: 410.3
Sample A Female 527.6
Sample B Female 410.3
Sample C Male 441.0
Sample D Male 635.4
Midbrain
nTPM: 529.2
Samples: 4

Max nTPM: 722.2
Min nTPM: 410.9
Sample A Female 722.2
Sample B Female 570.5
Sample C Male 413.3
Sample D Male 410.9
Periaqueductal gray
nTPM: 417.6
Samples: 3

Max nTPM: 441.5
Min nTPM: 374.5
Sample B Female 441.5
Sample C Male 374.5
Sample D Male 436.8
Superior colliculi
nTPM: 455.2
Samples: 4

Max nTPM: 521.7
Min nTPM: 308.3
Sample A Female 476.2
Sample B Female 308.3
Sample C Male 514.5
Sample D Male 521.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 355.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 355.4
Samples: 4

Max nTPM: 374.9
Min nTPM: 346.0
Sample A Male 346.0
Sample B Male 349.7
Sample C Female 374.9
Sample D Female 350.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
961 Antisense, RP_Baylor_103391, Mouse strain C57BL/6J (56 days, male) 2.6
962 Antisense, RP_Baylor_103391, Mouse strain C57BL/6J (56 days, male) 1.4

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