MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.0 nTPM
HPA Brain:62.0 nTPM
GTEx:72.0 nTPM
FANTOM5:175.7 Scaled Tags Per Million
Pig:62.8 nTPM
Mouse:141.1 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.4
2019 Male, age 18, unknown 59.2
2411 Female, age 72, unknown 53.1
1870 Female, age 42, unknown 52.7
1827 Male, age 72, unknown 49.1
1830 Male, age 51, unknown 48.1
1833 Male, age 53, unknown 47.9
2666 Male, age 74, left hemisphere 47.1
2828 Female, age 72, unknown 46.7
2219 Male, age 76, both hemispheres 45.4
2586 Male, age 75, left hemisphere 44.3
Dorsal raphe nucleus
nTPM: 52.7
2047 Male, age 72, unknown 54.7
2298 Female, age 72, unknown 54.5
2750 Male, age 76, both hemispheres 54.0
1828 Male, age 53, unknown 53.3
2016 Female, age 72, unknown 47.0
Inferior colliculus
nTPM: 49.1
2097 Female, age 72, unknown 56.1
1890 Male, age 53, unknown 50.0
1848 Female, age 42, unknown 47.4
2849 Male, age 72, unknown 43.0
Median raphe nucleus
nTPM: 62.0
2220 Male, age 76, midline 62.0
Periaquaductal grey, anterior
nTPM: 50.0
2502 Female, age 75, unknown 55.7
1947 Male, age 18, unknown 50.4
1795 Male, age 51, unknown 43.8
Periaquaductal grey, dorsal
nTPM: 47.5
2850 Male, age 76, both hemispheres 50.4
1831 Male, age 72, unknown 48.6
2464 Female, age 72, unknown 47.8
1840 Male, age 53, unknown 43.2
Periaquaductal grey, lateral
nTPM: 46.6
2272 Male, age 74, both hemispheres 50.0
2140 Male, age 76, both hemispheres 47.6
2053 Male, age 18, unknown 42.1
Pretectal area
nTPM: 51.0
1816 Male, age 51, unknown 58.8
1817 Female, age 42, unknown 56.6
1944 Female, age 72, unknown 56.5
2007 Male, age 72, unknown 53.8
1815 Male, age 53, unknown 53.7
2273 Male, age 74, both hemispheres 52.8
2316 Male, age 76, right hemisphere 50.0
2224 Female, age 72, unknown 48.3
2825 Male, age 18, unknown 44.4
2407 Male, age 75, both hemispheres 43.7
2667 Female, age 75, unknown 42.9
Red nucleus
nTPM: 54.6
1954 Female, age 42, unknown 60.6
2503 Female, age 72, unknown 59.1
1821 Female, age 72, unknown 58.4
2785 Male, age 18, unknown 56.2
2725 Female, age 75, unknown 55.7
1904 Male, age 53, unknown 54.2
1865 Male, age 51, unknown 54.0
2227 Male, age 72, unknown 53.2
2769 Male, age 72, unknown 52.9
2823 Male, age 76, right hemisphere 52.7
2588 Male, age 74, left hemisphere 52.4
2584 Male, age 75, left hemisphere 45.5
Substantia nigra
nTPM: 48.4
2241 Male, age 72, unknown 55.8
1889 Female, age 72, unknown 52.6
1941 Male, age 53, unknown 50.3
1851 Male, age 51, unknown 49.5
2590 Female, age 75, unknown 48.2
2665 Male, age 74, both hemispheres 48.0
1916 Female, age 42, unknown 46.8
2583 Male, age 75, right hemisphere 45.7
2699 Male, age 18, unknown 43.9
2409 Female, age 72, unknown 43.5
Superior colliculus
nTPM: 48.2
2087 Female, age 72, unknown 53.6
2261 Male, age 18, unknown 53.0
1913 Female, age 42, unknown 52.7
2668 Female, age 75, unknown 49.7
2587 Male, age 74, left hemisphere 49.1
1796 Male, age 53, unknown 45.8
1839 Male, age 51, unknown 45.4
2664 Male, age 75, both hemispheres 45.1
1995 Male, age 72, unknown 44.1
1895 Male, age 76, right hemisphere 43.6
Ventral tegmental area
nTPM: 50.9
2223 Female, age 72, unknown 54.2
1942 Male, age 51, unknown 53.0
2021 Male, age 53, unknown 53.0
1915 Female, age 42, unknown 49.3
2218 Male, age 76, both hemispheres 48.2
2410 Female, age 72, unknown 47.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.0
Samples: 139

Max nTPM: 123.5
Min nTPM: 51.9
Std nTPM: 12.7
Median nTPM: 71.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 123.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 111.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 109.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 101.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 100.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 96.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 95.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 94.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 92.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 92.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 91.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 175.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 175.7
FF:10158-103A5 76 years, female 175.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 62.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.3
Samples: 4

Max nTPM: 62.5
Min nTPM: 47.8
Sample A Female 62.5
Sample B Female 50.7
Sample C Male 56.2
Sample D Male 47.8
Midbrain
nTPM: 62.8
Samples: 4

Max nTPM: 70.9
Min nTPM: 53.5
Sample A Female 61.5
Sample B Female 53.5
Sample C Male 70.9
Sample D Male 65.2
Periaqueductal gray
nTPM: 50.5
Samples: 3

Max nTPM: 55.0
Min nTPM: 43.2
Sample B Female 43.2
Sample C Male 53.4
Sample D Male 55.0
Superior colliculi
nTPM: 61.4
Samples: 4

Max nTPM: 68.4
Min nTPM: 51.2
Sample A Female 63.9
Sample B Female 51.2
Sample C Male 68.4
Sample D Male 62.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 141.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 141.1
Samples: 4

Max nTPM: 148.6
Min nTPM: 136.2
Sample A Male 140.0
Sample B Male 139.5
Sample C Female 148.6
Sample D Female 136.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
68633306 Antisense, RP_050125_02_F07, Mouse strain C57BL/6J (56 days, male) 1.9
70918796 Antisense, RP_050712_04_E05, Mouse strain C57BL/6J (56 days, male) 0.0

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