MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.7 nTPM
HPA Brain:86.2 nTPM
GTEx:46.7 nTPM
FANTOM5:28.8 Scaled Tags Per Million
Pig:47.1 nTPM
Mouse:8.5 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 86.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83.1
2586 Male, age 75, left hemisphere 111.9
2666 Male, age 74, left hemisphere 98.3
2828 Female, age 72, unknown 95.5
2411 Female, age 72, unknown 84.6
1827 Male, age 72, unknown 83.0
2219 Male, age 76, both hemispheres 77.5
1870 Female, age 42, unknown 72.6
1830 Male, age 51, unknown 72.5
1833 Male, age 53, unknown 70.6
2019 Male, age 18, unknown 64.7
Dorsal raphe nucleus
nTPM: 84.8
2047 Male, age 72, unknown 94.9
1828 Male, age 53, unknown 87.4
2298 Female, age 72, unknown 85.8
2750 Male, age 76, both hemispheres 79.8
2016 Female, age 72, unknown 75.8
Inferior colliculus
nTPM: 70.1
1890 Male, age 53, unknown 75.2
2097 Female, age 72, unknown 74.7
2849 Male, age 72, unknown 65.7
1848 Female, age 42, unknown 64.6
Median raphe nucleus
nTPM: 80.7
2220 Male, age 76, midline 80.7
Periaquaductal grey, anterior
nTPM: 86.2
1795 Male, age 51, unknown 92.4
2502 Female, age 75, unknown 84.7
1947 Male, age 18, unknown 81.5
Periaquaductal grey, dorsal
nTPM: 72.3
1831 Male, age 72, unknown 76.2
2464 Female, age 72, unknown 75.0
1840 Male, age 53, unknown 69.4
2850 Male, age 76, both hemispheres 68.5
Periaquaductal grey, lateral
nTPM: 73.6
2053 Male, age 18, unknown 79.3
2272 Male, age 74, both hemispheres 71.9
2140 Male, age 76, both hemispheres 69.6
Pretectal area
nTPM: 74.3
1816 Male, age 51, unknown 84.1
1815 Male, age 53, unknown 79.5
1944 Female, age 72, unknown 78.9
2007 Male, age 72, unknown 77.0
2667 Female, age 75, unknown 73.5
2407 Male, age 75, both hemispheres 73.2
2316 Male, age 76, right hemisphere 72.1
2825 Male, age 18, unknown 71.8
1817 Female, age 42, unknown 70.0
2224 Female, age 72, unknown 68.8
2273 Male, age 74, both hemispheres 68.0
Red nucleus
nTPM: 74.8
2584 Male, age 75, left hemisphere 85.3
2588 Male, age 74, left hemisphere 83.0
2503 Female, age 72, unknown 81.4
2769 Male, age 72, unknown 78.3
2227 Male, age 72, unknown 77.9
2785 Male, age 18, unknown 75.4
1904 Male, age 53, unknown 73.1
1865 Male, age 51, unknown 72.2
2725 Female, age 75, unknown 69.1
1954 Female, age 42, unknown 68.5
2823 Male, age 76, right hemisphere 67.2
1821 Female, age 72, unknown 65.7
Substantia nigra
nTPM: 80.6
1916 Female, age 42, unknown 98.3
2665 Male, age 74, both hemispheres 92.7
1851 Male, age 51, unknown 89.1
2699 Male, age 18, unknown 84.8
2590 Female, age 75, unknown 80.1
2583 Male, age 75, right hemisphere 79.8
1889 Female, age 72, unknown 75.0
1941 Male, age 53, unknown 72.4
2409 Female, age 72, unknown 69.6
2241 Male, age 72, unknown 64.6
Superior colliculus
nTPM: 79.0
2261 Male, age 18, unknown 93.5
2664 Male, age 75, both hemispheres 89.4
2668 Female, age 75, unknown 86.5
1796 Male, age 53, unknown 85.3
2087 Female, age 72, unknown 81.2
1913 Female, age 42, unknown 79.3
1995 Male, age 72, unknown 75.5
2587 Male, age 74, left hemisphere 71.2
1839 Male, age 51, unknown 67.5
1895 Male, age 76, right hemisphere 60.4
Ventral tegmental area
nTPM: 78.9
1915 Female, age 42, unknown 82.7
2021 Male, age 53, unknown 82.5
2410 Female, age 72, unknown 79.9
1942 Male, age 51, unknown 78.7
2223 Female, age 72, unknown 75.2
2218 Male, age 76, both hemispheres 74.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.7
Samples: 139

Max nTPM: 69.7
Min nTPM: 26.6
Std nTPM: 7.6
Median nTPM: 45.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 69.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 67.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 66.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 66.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 64.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 62.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 61.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 61.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 60.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 59.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 58.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.8
FF:10158-103A5 76 years, female 28.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 47.1
Samples: 4

Max nTPM: 50.6
Min nTPM: 44.1
Sample A Female 50.6
Sample B Female 44.1
Sample C Male 46.6
Sample D Male 47.0
Midbrain
nTPM: 45.0
Samples: 4

Max nTPM: 64.0
Min nTPM: 35.4
Sample A Female 64.0
Sample B Female 40.1
Sample C Male 40.4
Sample D Male 35.4
Periaqueductal gray
nTPM: 37.9
Samples: 3

Max nTPM: 41.9
Min nTPM: 33.9
Sample B Female 37.8
Sample C Male 41.9
Sample D Male 33.9
Superior colliculi
nTPM: 43.3
Samples: 4

Max nTPM: 46.4
Min nTPM: 39.2
Sample A Female 46.0
Sample B Female 46.4
Sample C Male 39.2
Sample D Male 41.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.6
Samples: 4

Max nTPM: 9.6
Min nTPM: 8.0
Sample A Male 9.6
Sample B Male 8.0
Sample C Female 8.2
Sample D Female 8.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
71656704 Antisense, RP_050927_04_B08, Mouse strain C57BL/6J (56 days, male) 1.4
71148010 Antisense, RP_050719_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2
71325378 Antisense, RP_050825_02_G05, Mouse strain C57BL/6J (56 days, male) 0.2

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