MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:133.8 nTPM
HPA Brain:194.4 nTPM
GTEx:133.8 nTPM
FANTOM5:219.3 Scaled Tags Per Million
Pig:147.8 nTPM
Mouse:268.1 nTPM
Allen mouse:17.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 194.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 126.5
1870 Female, age 42, unknown 152.7
2411 Female, age 72, unknown 151.0
1827 Male, age 72, unknown 150.7
1833 Male, age 53, unknown 131.7
2219 Male, age 76, both hemispheres 122.3
1830 Male, age 51, unknown 121.9
2019 Male, age 18, unknown 119.8
2666 Male, age 74, left hemisphere 118.0
2828 Female, age 72, unknown 113.4
2586 Male, age 75, left hemisphere 84.1
Dorsal raphe nucleus
nTPM: 152.5
2298 Female, age 72, unknown 188.2
2750 Male, age 76, both hemispheres 162.1
2047 Male, age 72, unknown 160.8
1828 Male, age 53, unknown 130.6
2016 Female, age 72, unknown 120.7
Inferior colliculus
nTPM: 129.7
2097 Female, age 72, unknown 144.8
1848 Female, age 42, unknown 128.8
2849 Male, age 72, unknown 128.8
1890 Male, age 53, unknown 116.3
Median raphe nucleus
nTPM: 194.4
2220 Male, age 76, midline 194.4
Periaquaductal grey, anterior
nTPM: 144.1
1947 Male, age 18, unknown 147.8
2502 Female, age 75, unknown 146.4
1795 Male, age 51, unknown 138.1
Periaquaductal grey, dorsal
nTPM: 137.8
2850 Male, age 76, both hemispheres 157.0
1840 Male, age 53, unknown 150.9
1831 Male, age 72, unknown 127.5
2464 Female, age 72, unknown 115.6
Periaquaductal grey, lateral
nTPM: 138.5
2272 Male, age 74, both hemispheres 147.2
2140 Male, age 76, both hemispheres 134.8
2053 Male, age 18, unknown 133.4
Pretectal area
nTPM: 144.4
2224 Female, age 72, unknown 173.5
1816 Male, age 51, unknown 151.6
1944 Female, age 72, unknown 151.6
2007 Male, age 72, unknown 147.6
2273 Male, age 74, both hemispheres 146.5
1817 Female, age 42, unknown 145.8
1815 Male, age 53, unknown 144.0
2667 Female, age 75, unknown 141.1
2825 Male, age 18, unknown 137.9
2407 Male, age 75, both hemispheres 134.6
2316 Male, age 76, right hemisphere 114.1
Red nucleus
nTPM: 114.7
1821 Female, age 72, unknown 137.1
2725 Female, age 75, unknown 132.3
2584 Male, age 75, left hemisphere 124.2
1954 Female, age 42, unknown 123.3
2785 Male, age 18, unknown 115.5
1865 Male, age 51, unknown 113.2
2823 Male, age 76, right hemisphere 112.9
1904 Male, age 53, unknown 107.9
2503 Female, age 72, unknown 106.9
2227 Male, age 72, unknown 102.1
2588 Male, age 74, left hemisphere 100.5
2769 Male, age 72, unknown 100.4
Substantia nigra
nTPM: 146.3
2241 Male, age 72, unknown 196.8
1916 Female, age 42, unknown 180.8
1941 Male, age 53, unknown 162.3
1889 Female, age 72, unknown 158.4
1851 Male, age 51, unknown 151.9
2699 Male, age 18, unknown 139.6
2409 Female, age 72, unknown 136.1
2590 Female, age 75, unknown 118.7
2583 Male, age 75, right hemisphere 110.8
2665 Male, age 74, both hemispheres 107.4
Superior colliculus
nTPM: 122.5
2587 Male, age 74, left hemisphere 140.7
1796 Male, age 53, unknown 136.0
2261 Male, age 18, unknown 135.5
2087 Female, age 72, unknown 129.6
1839 Male, age 51, unknown 127.7
1895 Male, age 76, right hemisphere 127.5
2668 Female, age 75, unknown 127.0
1913 Female, age 42, unknown 111.7
2664 Male, age 75, both hemispheres 98.3
1995 Male, age 72, unknown 91.4
Ventral tegmental area
nTPM: 151.9
2218 Male, age 76, both hemispheres 162.0
2223 Female, age 72, unknown 158.0
1915 Female, age 42, unknown 157.8
2410 Female, age 72, unknown 155.2
1942 Male, age 51, unknown 139.3
2021 Male, age 53, unknown 139.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 133.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 133.8
Samples: 139

Max nTPM: 205.4
Min nTPM: 63.4
Std nTPM: 25.7
Median nTPM: 135.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 205.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 187.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 187.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 186.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 185.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 184.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 181.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 180.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 177.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 175.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 170.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 219.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 219.3
FF:10158-103A5 76 years, female 219.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 147.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 147.9
Samples: 4

Max nTPM: 191.0
Min nTPM: 103.7
Sample A Female 191.0
Sample B Female 124.2
Sample C Male 172.5
Sample D Male 103.7
Midbrain
nTPM: 147.7
Samples: 4

Max nTPM: 163.3
Min nTPM: 121.2
Sample A Female 163.3
Sample B Female 154.6
Sample C Male 121.2
Sample D Male 151.5
Periaqueductal gray
nTPM: 136.5
Samples: 3

Max nTPM: 153.4
Min nTPM: 125.3
Sample B Female 125.3
Sample C Male 153.4
Sample D Male 130.9
Superior colliculi
nTPM: 132.2
Samples: 4

Max nTPM: 155.7
Min nTPM: 115.5
Sample A Female 155.7
Sample B Female 115.5
Sample C Male 118.8
Sample D Male 138.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 268.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 268.1
Samples: 4

Max nTPM: 271.5
Min nTPM: 260.8
Sample A Male 269.9
Sample B Male 260.8
Sample C Female 271.5
Sample D Female 270.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.0
70946634 Antisense, RP_050505_01_F06, Mouse strain C57BL/6J (56 days, male) 17.0

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