HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:13.0 nTPM
HPA Brain:32.2 nTPM
GTEx:13.0 nTPM
FANTOM5:59.7 Scaled Tags Per Million
Pig:55.7 nTPM
Mouse:3.2 nTPM
Allen mouse:1.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003093
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 32.2
Sample id Sample description nTPM
Hippocampus
nTPM: 29.5
1898 Male, age 80, left hemisphere 38.2
2529 Female, age 94, left hemisphere 32.2
1911 Female, age 85, right hemisphere 28.6
1855 Male, age 76, left hemisphere 27.4
2148 Female, age 91, left hemisphere 25.3
2621 Female, age 67, right hemisphere 25.2
Dentate gyrus
nTPM: 27.2
2528 Male, age 74, both hemispheres 31.8
1927 Female, age 91, both hemispheres 31.0
2246 Female, age 85, both hemispheres 27.3
2010 Male, age 76, both hemispheres 27.2
2530 Female, age 94, left hemisphere 25.4
2531 Female, age 67, both hemispheres 20.0
Entorhinal gyrus
nTPM: 27.6
1938 Female, age 85, left hemisphere 35.4
2117 Female, age 91, right hemisphere 32.3
2764 Male, age 80, right hemisphere 27.8
1787 Male, age 76, left hemisphere 25.9
2613 Female, age 94, left hemisphere 22.2
2686 Male, age 75, right hemisphere 21.7
Hippocampus, CA1
nTPM: 31.3
2749 Male, age 80, left hemisphere 39.6
1873 Female, age 85, both hemispheres 33.3
2527 Male, age 74, both hemispheres 32.3
2082 Female, age 91, right hemisphere 26.7
2045 Male, age 76, both hemispheres 24.5
Hippocampus, CA2
nTPM: 29.6
1963 Male, age 80, left hemisphere 35.3
1892 Male, age 76, both hemispheres 30.8
2249 Male, age 74, both hemispheres 30.1
2113 Female, age 91, right hemisphere 28.0
1940 Female, age 85, left hemisphere 27.3
2437 Female, age 94, left hemisphere 25.9
Hippocampus, CA3
nTPM: 27.2
2436 Male, age 74, both hemispheres 30.3
2137 Male, age 80, left hemisphere 30.1
1891 Female, age 85, both hemispheres 29.9
1867 Male, age 76, both hemispheres 27.0
2620 Female, age 94, left hemisphere 23.5
2861 Female, age 67, both hemispheres 22.5
Parahippocampal cortex
nTPM: 28.8
1850 Male, age 80, both hemispheres 36.0
1933 Female, age 85, both hemispheres 33.3
2250 Female, age 67, right hemisphere 33.1
1990 Female, age 91, right hemisphere 31.0
2692 Male, age 74, both hemispheres 30.2
2693 Female, age 94, both hemispheres 27.4
2245 Female, age 91, both hemispheres 27.0
2532 Female, age 72, left hemisphere 26.0
2622 Female, age 67, right hemisphere 22.3
2018 Male, age 76, both hemispheres 21.6
Perirhinal gyrus
nTPM: 32.2
1794 Male, age 80, right hemisphere 34.8
1841 Female, age 85, right hemisphere 34.7
1847 Female, age 91, left hemisphere 34.1
2521 Female, age 94, right hemisphere 29.8
2848 Male, age 76, right hemisphere 27.6
Subiculum
nTPM: 28.0
1977 Female, age 85, both hemispheres 30.6
2729 Female, age 91, right hemisphere 29.9
1901 Male, age 80, both hemispheres 29.7
2438 Female, age 94, left hemisphere 28.4
2619 Male, age 74, both hemispheres 27.3
2042 Male, age 76, both hemispheres 22.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.0
Samples: 197

Max nTPM: 22.0
Min nTPM: 6.3
Std nTPM: 2.6
Median nTPM: 12.8
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 22.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 21.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 20.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 19.7
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 19.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 19.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 18.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 18.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 18.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 18.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 17.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 59.7
FF:10169-103B7 60 years, female 65.4
FF:10153-102I9 76 years, female 54.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 55.7
Pig sample Sample description nTPM
Subiculum
nTPM: 55.7
Samples: 4

Max nTPM: 64.2
Min nTPM: 51.4
Sample A Female 64.2
Sample B Female 52.5
Sample C Male 54.5
Sample D Male 51.4
Dorsal hippocampus
nTPM: 48.9
Samples: 4

Max nTPM: 54.8
Min nTPM: 39.0
Sample A Female 51.8
Sample B Female 49.8
Sample C Male 54.8
Sample D Male 39.0
Entorhinal cortex
nTPM: 47.9
Samples: 4

Max nTPM: 55.3
Min nTPM: 42.0
Sample A Female 42.0
Sample B Female 50.1
Sample C Male 55.3
Sample D Male 44.0
Ventral hippocampus
nTPM: 48.3
Samples: 4

Max nTPM: 52.7
Min nTPM: 41.7
Sample A Female 52.7
Sample B Female 41.7
Sample C Male 49.9
Sample D Male 48.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 3.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 3.3
Samples: 4

Max nTPM: 3.4
Min nTPM: 3.1
Sample A Male 3.4
Sample B Male 3.1
Sample C Female 3.1
Sample D Female 3.4
Hippocampal formation
nTPM: 3.1
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.7
Sample A Male 2.7
Sample B Male 3.2
Sample C Female 3.5
Sample D Female 2.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.9
68563104 Antisense, RP_050125_01_B04, Mouse strain C57BL/6J (56 days, male) 1.9

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