MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.9 nTPM
HPA Brain:19.6 nTPM
GTEx:11.9 nTPM
FANTOM5:36.1 Scaled Tags Per Million
Pig:21.0 nTPM
Mouse:17.0 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.5
2219 Male, age 76, both hemispheres 25.2
2586 Male, age 75, left hemisphere 22.9
2828 Female, age 72, unknown 19.8
1870 Female, age 42, unknown 19.4
1827 Male, age 72, unknown 19.2
1833 Male, age 53, unknown 18.9
1830 Male, age 51, unknown 18.5
2666 Male, age 74, left hemisphere 18.3
2411 Female, age 72, unknown 17.1
2019 Male, age 18, unknown 16.1
Dorsal raphe nucleus
nTPM: 17.9
2298 Female, age 72, unknown 18.9
1828 Male, age 53, unknown 18.1
2047 Male, age 72, unknown 17.9
2750 Male, age 76, both hemispheres 17.5
2016 Female, age 72, unknown 17.1
Inferior colliculus
nTPM: 19.6
2849 Male, age 72, unknown 21.9
1890 Male, age 53, unknown 19.3
1848 Female, age 42, unknown 18.7
2097 Female, age 72, unknown 18.7
Median raphe nucleus
nTPM: 19.3
2220 Male, age 76, midline 19.3
Periaquaductal grey, anterior
nTPM: 18.3
1947 Male, age 18, unknown 18.8
2502 Female, age 75, unknown 18.6
1795 Male, age 51, unknown 17.5
Periaquaductal grey, dorsal
nTPM: 19.2
1840 Male, age 53, unknown 20.5
2850 Male, age 76, both hemispheres 20.4
1831 Male, age 72, unknown 19.9
2464 Female, age 72, unknown 16.2
Periaquaductal grey, lateral
nTPM: 18.4
2053 Male, age 18, unknown 19.2
2140 Male, age 76, both hemispheres 18.8
2272 Male, age 74, both hemispheres 17.2
Pretectal area
nTPM: 18.9
2407 Male, age 75, both hemispheres 20.7
1817 Female, age 42, unknown 20.0
2825 Male, age 18, unknown 19.8
1815 Male, age 53, unknown 19.3
2224 Female, age 72, unknown 19.0
1816 Male, age 51, unknown 18.8
2316 Male, age 76, right hemisphere 18.8
2667 Female, age 75, unknown 18.8
1944 Female, age 72, unknown 18.1
2007 Male, age 72, unknown 18.0
2273 Male, age 74, both hemispheres 16.8
Red nucleus
nTPM: 19.4
1865 Male, age 51, unknown 21.6
1821 Female, age 72, unknown 20.8
2725 Female, age 75, unknown 20.4
1904 Male, age 53, unknown 19.4
2503 Female, age 72, unknown 19.3
2584 Male, age 75, left hemisphere 19.2
2823 Male, age 76, right hemisphere 19.1
2588 Male, age 74, left hemisphere 18.9
1954 Female, age 42, unknown 18.7
2227 Male, age 72, unknown 18.7
2785 Male, age 18, unknown 18.6
2769 Male, age 72, unknown 18.4
Substantia nigra
nTPM: 18.5
2665 Male, age 74, both hemispheres 21.7
2583 Male, age 75, right hemisphere 20.2
2699 Male, age 18, unknown 20.1
2590 Female, age 75, unknown 19.6
1889 Female, age 72, unknown 17.9
1851 Male, age 51, unknown 17.7
1941 Male, age 53, unknown 17.6
1916 Female, age 42, unknown 17.2
2241 Male, age 72, unknown 17.2
2409 Female, age 72, unknown 15.5
Superior colliculus
nTPM: 19.1
1913 Female, age 42, unknown 20.9
2664 Male, age 75, both hemispheres 20.7
1995 Male, age 72, unknown 20.4
1839 Male, age 51, unknown 20.1
2261 Male, age 18, unknown 19.5
1895 Male, age 76, right hemisphere 19.4
1796 Male, age 53, unknown 18.4
2587 Male, age 74, left hemisphere 17.6
2087 Female, age 72, unknown 17.5
2668 Female, age 75, unknown 16.7
Ventral tegmental area
nTPM: 18.1
2218 Male, age 76, both hemispheres 18.9
2021 Male, age 53, unknown 18.6
2223 Female, age 72, unknown 18.5
1915 Female, age 42, unknown 17.8
1942 Male, age 51, unknown 17.6
2410 Female, age 72, unknown 17.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.9
GTEx sample id Sample description nTPM
10.311.513.16.517.302468101214161820
Brain - Substantia nigra
Average nTPM: 11.9
Samples: 139

Max nTPM: 21.1
Min nTPM: 5.5
Std nTPM: 2.6
Median nTPM: 11.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 21.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 19.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 18.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 18.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 17.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 17.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 17.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 16.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 16.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 16.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 16.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.1
FF:10158-103A5 76 years, female 36.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.0
Pig sample Sample description nTPM
18.819.219.419.119.5024681012141618
 		Substantia nigra
nTPM: 19.0
Samples: 4

Max nTPM: 19.5
Min nTPM: 17.9
Sample A Female 19.5
Sample B Female 19.3
Sample C Male 17.9
Sample D Male 19.1
18.619.922.118.225.6024681012141618202224
 		Midbrain
nTPM: 20.9
Samples: 4

Max nTPM: 25.6
Min nTPM: 18.2
Sample A Female 25.6
Sample B Female 18.7
Sample C Male 18.2
Sample D Male 21.0
19.319.920.718.621.502468101214161820
 		Periaqueductal gray
nTPM: 20.0
Samples: 3

Max nTPM: 21.5
Min nTPM: 18.6
Sample B Female 18.6
Sample C Male 21.5
Sample D Male 19.9
20.421.221.821.123.30246810121416182022
 		Superior colliculi
nTPM: 21.0
Samples: 4

Max nTPM: 23.3
Min nTPM: 18.1
Sample A Female 21.1
Sample B Female 23.3
Sample C Male 18.1
Sample D Male 21.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.0
Samples: 4

Max nTPM: 17.9
Min nTPM: 15.7
Sample A Male 16.6
Sample B Male 15.7
Sample C Female 17.9
Sample D Female 17.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
79360261 Antisense, RP_071018_01_F06, Mouse strain C57BL/6J (56 days, male) 0.4

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