MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.2 nTPM
HPA Brain:25.1 nTPM
GTEx:26.2 nTPM
FANTOM5:45.6 Scaled Tags Per Million
Pig:31.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.8
2411 Female, age 72, unknown 25.7
2019 Male, age 18, unknown 25.4
1870 Female, age 42, unknown 24.9
1833 Male, age 53, unknown 23.1
1830 Male, age 51, unknown 22.9
2666 Male, age 74, left hemisphere 21.1
2586 Male, age 75, left hemisphere 19.8
2219 Male, age 76, both hemispheres 19.4
1827 Male, age 72, unknown 18.4
2828 Female, age 72, unknown 17.3
Dorsal raphe nucleus
nTPM: 22.4
2750 Male, age 76, both hemispheres 25.1
1828 Male, age 53, unknown 22.8
2016 Female, age 72, unknown 22.1
2298 Female, age 72, unknown 21.2
2047 Male, age 72, unknown 20.7
Inferior colliculus
nTPM: 20.2
2097 Female, age 72, unknown 22.6
1890 Male, age 53, unknown 21.1
1848 Female, age 42, unknown 19.8
2849 Male, age 72, unknown 17.4
Median raphe nucleus
nTPM: 24.1
2220 Male, age 76, midline 24.1
Periaquaductal grey, anterior
nTPM: 20.4
2502 Female, age 75, unknown 22.9
1947 Male, age 18, unknown 21.9
1795 Male, age 51, unknown 16.4
Periaquaductal grey, dorsal
nTPM: 18.8
2464 Female, age 72, unknown 20.6
2850 Male, age 76, both hemispheres 20.1
1840 Male, age 53, unknown 17.7
1831 Male, age 72, unknown 16.8
Periaquaductal grey, lateral
nTPM: 18.4
2272 Male, age 74, both hemispheres 19.1
2140 Male, age 76, both hemispheres 18.0
2053 Male, age 18, unknown 17.9
Pretectal area
nTPM: 19.7
1817 Female, age 42, unknown 22.7
1815 Male, age 53, unknown 22.2
2007 Male, age 72, unknown 22.1
2224 Female, age 72, unknown 21.0
2273 Male, age 74, both hemispheres 20.3
1944 Female, age 72, unknown 20.2
2667 Female, age 75, unknown 18.6
1816 Male, age 51, unknown 18.1
2316 Male, age 76, right hemisphere 18.1
2825 Male, age 18, unknown 17.9
2407 Male, age 75, both hemispheres 15.2
Red nucleus
nTPM: 24.5
1821 Female, age 72, unknown 31.8
1865 Male, age 51, unknown 28.0
1954 Female, age 42, unknown 27.3
1904 Male, age 53, unknown 27.2
2823 Male, age 76, right hemisphere 24.4
2769 Male, age 72, unknown 24.1
2227 Male, age 72, unknown 23.9
2503 Female, age 72, unknown 23.4
2785 Male, age 18, unknown 22.9
2725 Female, age 75, unknown 21.7
2588 Male, age 74, left hemisphere 20.1
2584 Male, age 75, left hemisphere 19.1
Substantia nigra
nTPM: 25.1
2241 Male, age 72, unknown 36.6
1916 Female, age 42, unknown 30.1
1851 Male, age 51, unknown 28.8
2699 Male, age 18, unknown 25.3
1941 Male, age 53, unknown 24.5
2409 Female, age 72, unknown 24.2
1889 Female, age 72, unknown 24.0
2590 Female, age 75, unknown 21.0
2665 Male, age 74, both hemispheres 18.4
2583 Male, age 75, right hemisphere 18.2
Superior colliculus
nTPM: 19.8
2668 Female, age 75, unknown 23.7
2587 Male, age 74, left hemisphere 23.3
1913 Female, age 42, unknown 20.5
1839 Male, age 51, unknown 20.2
1895 Male, age 76, right hemisphere 19.7
1995 Male, age 72, unknown 19.5
2664 Male, age 75, both hemispheres 18.2
1796 Male, age 53, unknown 17.7
2261 Male, age 18, unknown 17.7
2087 Female, age 72, unknown 17.4
Ventral tegmental area
nTPM: 23.9
2410 Female, age 72, unknown 29.0
1915 Female, age 42, unknown 25.4
2223 Female, age 72, unknown 24.5
2218 Male, age 76, both hemispheres 23.9
1942 Male, age 51, unknown 21.5
2021 Male, age 53, unknown 19.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.2
Samples: 139

Max nTPM: 41.4
Min nTPM: 16.2
Std nTPM: 5.0
Median nTPM: 25.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 41.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 40.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 39.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 37.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 36.2
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 36.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 36.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 36.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 35.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 34.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 33.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.6
FF:10158-103A5 76 years, female 45.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.8
Samples: 4

Max nTPM: 38.7
Min nTPM: 25.3
Sample A Female 38.7
Sample B Female 25.8
Sample C Male 29.2
Sample D Male 25.3
Midbrain
nTPM: 31.7
Samples: 4

Max nTPM: 36.0
Min nTPM: 25.7
Sample A Female 36.0
Sample B Female 31.3
Sample C Male 33.7
Sample D Male 25.7
Periaqueductal gray
nTPM: 22.2
Samples: 3

Max nTPM: 23.4
Min nTPM: 21.1
Sample B Female 22.2
Sample C Male 23.4
Sample D Male 21.1
Superior colliculi
nTPM: 27.9
Samples: 4

Max nTPM: 34.1
Min nTPM: 21.4
Sample A Female 29.5
Sample B Female 21.4
Sample C Male 34.1
Sample D Male 26.7

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