MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:124.5 nTPM
HPA Brain:172.4 nTPM
GTEx:124.5 nTPM
FANTOM5:195.5 Scaled Tags Per Million
Pig:54.4 nTPM
Mouse:54.1 nTPM
Allen mouse:6.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 172.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 142.1
1830 Male, age 51, unknown 183.8
2586 Male, age 75, left hemisphere 174.5
2411 Female, age 72, unknown 163.4
1833 Male, age 53, unknown 160.5
2666 Male, age 74, left hemisphere 157.8
1870 Female, age 42, unknown 136.7
2019 Male, age 18, unknown 129.4
2828 Female, age 72, unknown 123.2
1827 Male, age 72, unknown 96.5
2219 Male, age 76, both hemispheres 95.8
Dorsal raphe nucleus
nTPM: 89.4
2750 Male, age 76, both hemispheres 141.8
2016 Female, age 72, unknown 117.9
1828 Male, age 53, unknown 86.1
2047 Male, age 72, unknown 55.2
2298 Female, age 72, unknown 46.0
Inferior colliculus
nTPM: 80.6
2849 Male, age 72, unknown 95.7
1848 Female, age 42, unknown 84.5
1890 Male, age 53, unknown 82.7
2097 Female, age 72, unknown 59.4
Median raphe nucleus
nTPM: 56.6
2220 Male, age 76, midline 56.6
Periaquaductal grey, anterior
nTPM: 85.4
2502 Female, age 75, unknown 108.3
1947 Male, age 18, unknown 86.0
1795 Male, age 51, unknown 61.8
Periaquaductal grey, dorsal
nTPM: 71.2
2464 Female, age 72, unknown 108.8
1831 Male, age 72, unknown 76.0
1840 Male, age 53, unknown 54.0
2850 Male, age 76, both hemispheres 46.1
Periaquaductal grey, lateral
nTPM: 66.4
2053 Male, age 18, unknown 88.5
2272 Male, age 74, both hemispheres 62.8
2140 Male, age 76, both hemispheres 48.0
Pretectal area
nTPM: 80.8
1815 Male, age 53, unknown 116.5
2316 Male, age 76, right hemisphere 115.8
2407 Male, age 75, both hemispheres 111.2
2825 Male, age 18, unknown 98.2
1817 Female, age 42, unknown 85.1
2007 Male, age 72, unknown 82.1
2667 Female, age 75, unknown 65.1
2224 Female, age 72, unknown 61.5
2273 Male, age 74, both hemispheres 53.0
1944 Female, age 72, unknown 52.2
1816 Male, age 51, unknown 48.5
Red nucleus
nTPM: 172.4
2588 Male, age 74, left hemisphere 236.9
1865 Male, age 51, unknown 212.6
2503 Female, age 72, unknown 197.2
1904 Male, age 53, unknown 189.9
2769 Male, age 72, unknown 173.6
2227 Male, age 72, unknown 172.5
1821 Female, age 72, unknown 165.1
2823 Male, age 76, right hemisphere 155.4
2785 Male, age 18, unknown 152.7
2584 Male, age 75, left hemisphere 145.0
1954 Female, age 42, unknown 142.1
2725 Female, age 75, unknown 125.6
Substantia nigra
nTPM: 106.7
2665 Male, age 74, both hemispheres 142.7
2583 Male, age 75, right hemisphere 126.9
2590 Female, age 75, unknown 123.8
1851 Male, age 51, unknown 117.8
2409 Female, age 72, unknown 116.0
2699 Male, age 18, unknown 108.3
2241 Male, age 72, unknown 94.0
1889 Female, age 72, unknown 92.2
1941 Male, age 53, unknown 83.2
1916 Female, age 42, unknown 62.5
Superior colliculus
nTPM: 119.1
1995 Male, age 72, unknown 178.1
1913 Female, age 42, unknown 160.6
2587 Male, age 74, left hemisphere 138.6
1839 Male, age 51, unknown 134.1
2664 Male, age 75, both hemispheres 121.5
1895 Male, age 76, right hemisphere 119.2
2668 Female, age 75, unknown 117.5
1796 Male, age 53, unknown 82.4
2261 Male, age 18, unknown 72.1
2087 Female, age 72, unknown 67.2
Ventral tegmental area
nTPM: 97.4
2410 Female, age 72, unknown 125.2
2223 Female, age 72, unknown 119.8
2021 Male, age 53, unknown 95.8
1942 Male, age 51, unknown 91.4
1915 Female, age 42, unknown 84.4
2218 Male, age 76, both hemispheres 67.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 124.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 124.5
Samples: 139

Max nTPM: 483.4
Min nTPM: 16.5
Std nTPM: 81.5
Median nTPM: 102.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 483.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 368.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 364.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 309.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 294.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 292.4
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 282.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 278.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 267.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 260.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 258.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 195.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 195.5
FF:10158-103A5 76 years, female 195.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.4
Samples: 4

Max nTPM: 68.1
Min nTPM: 43.8
Sample A Female 60.4
Sample B Female 43.8
Sample C Male 45.2
Sample D Male 68.1
Midbrain
nTPM: 50.0
Samples: 4

Max nTPM: 74.6
Min nTPM: 31.9
Sample A Female 58.2
Sample B Female 74.6
Sample C Male 31.9
Sample D Male 35.1
Periaqueductal gray
nTPM: 49.1
Samples: 3

Max nTPM: 60.4
Min nTPM: 38.3
Sample B Female 60.4
Sample C Male 38.3
Sample D Male 48.6
Superior colliculi
nTPM: 41.2
Samples: 4

Max nTPM: 47.8
Min nTPM: 26.7
Sample A Female 47.8
Sample B Female 26.7
Sample C Male 42.6
Sample D Male 47.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 54.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.1
Samples: 4

Max nTPM: 57.7
Min nTPM: 52.4
Sample A Male 53.7
Sample B Male 57.7
Sample C Female 52.6
Sample D Female 52.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.3
71612166 Antisense, RP_050927_02_C01, Mouse strain C57BL/6J (56 days, male) 6.3

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