MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.9 nTPM
HPA Brain:29.9 nTPM
GTEx:10.9 nTPM
FANTOM5:18.3 Scaled Tags Per Million
Pig:16.9 nTPM
Mouse:23.7 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.9
2666 Male, age 74, left hemisphere 28.0
2019 Male, age 18, unknown 26.9
2586 Male, age 75, left hemisphere 24.4
1827 Male, age 72, unknown 24.1
1833 Male, age 53, unknown 22.9
1870 Female, age 42, unknown 21.8
1830 Male, age 51, unknown 21.4
2828 Female, age 72, unknown 21.1
2411 Female, age 72, unknown 19.8
2219 Male, age 76, both hemispheres 18.9
Dorsal raphe nucleus
nTPM: 27.5
2047 Male, age 72, unknown 30.2
1828 Male, age 53, unknown 29.0
2298 Female, age 72, unknown 27.4
2016 Female, age 72, unknown 26.5
2750 Male, age 76, both hemispheres 24.3
Inferior colliculus
nTPM: 27.6
1890 Male, age 53, unknown 31.3
2097 Female, age 72, unknown 29.2
2849 Male, age 72, unknown 26.2
1848 Female, age 42, unknown 23.6
Median raphe nucleus
nTPM: 29.9
2220 Male, age 76, midline 29.9
Periaquaductal grey, anterior
nTPM: 20.1
1795 Male, age 51, unknown 22.0
2502 Female, age 75, unknown 20.0
1947 Male, age 18, unknown 18.3
Periaquaductal grey, dorsal
nTPM: 26.0
2850 Male, age 76, both hemispheres 28.3
1840 Male, age 53, unknown 27.8
1831 Male, age 72, unknown 25.1
2464 Female, age 72, unknown 22.6
Periaquaductal grey, lateral
nTPM: 26.4
2272 Male, age 74, both hemispheres 30.0
2140 Male, age 76, both hemispheres 26.5
2053 Male, age 18, unknown 22.8
Pretectal area
nTPM: 25.7
1944 Female, age 72, unknown 32.6
1816 Male, age 51, unknown 31.0
1817 Female, age 42, unknown 27.6
2007 Male, age 72, unknown 26.9
2273 Male, age 74, both hemispheres 26.7
2224 Female, age 72, unknown 25.7
2407 Male, age 75, both hemispheres 24.7
1815 Male, age 53, unknown 23.9
2825 Male, age 18, unknown 23.0
2316 Male, age 76, right hemisphere 22.8
2667 Female, age 75, unknown 18.2
Red nucleus
nTPM: 20.2
2584 Male, age 75, left hemisphere 27.4
2785 Male, age 18, unknown 22.2
2823 Male, age 76, right hemisphere 21.6
2725 Female, age 75, unknown 20.9
1954 Female, age 42, unknown 20.4
2227 Male, age 72, unknown 19.4
2769 Male, age 72, unknown 19.3
2503 Female, age 72, unknown 19.2
2588 Male, age 74, left hemisphere 18.7
1865 Male, age 51, unknown 18.4
1904 Male, age 53, unknown 17.8
1821 Female, age 72, unknown 17.5
Substantia nigra
nTPM: 25.3
1916 Female, age 42, unknown 29.2
2241 Male, age 72, unknown 26.4
2583 Male, age 75, right hemisphere 26.4
2590 Female, age 75, unknown 26.3
2665 Male, age 74, both hemispheres 25.8
1889 Female, age 72, unknown 25.5
1941 Male, age 53, unknown 24.6
2699 Male, age 18, unknown 24.4
1851 Male, age 51, unknown 22.6
2409 Female, age 72, unknown 21.6
Superior colliculus
nTPM: 24.6
2668 Female, age 75, unknown 31.2
2087 Female, age 72, unknown 29.7
2261 Male, age 18, unknown 26.9
2587 Male, age 74, left hemisphere 25.0
1839 Male, age 51, unknown 24.8
2664 Male, age 75, both hemispheres 24.1
1796 Male, age 53, unknown 22.4
1995 Male, age 72, unknown 21.8
1895 Male, age 76, right hemisphere 20.7
1913 Female, age 42, unknown 19.3
Ventral tegmental area
nTPM: 23.5
2218 Male, age 76, both hemispheres 27.3
2223 Female, age 72, unknown 24.1
2021 Male, age 53, unknown 24.0
1915 Female, age 42, unknown 23.4
1942 Male, age 51, unknown 22.3
2410 Female, age 72, unknown 20.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.9
Samples: 139

Max nTPM: 19.9
Min nTPM: 3.6
Std nTPM: 3.4
Median nTPM: 10.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 19.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 18.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 18.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 18.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 18.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 17.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 17.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 17.6
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 17.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 16.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 16.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.3
FF:10158-103A5 76 years, female 18.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.9
Samples: 4

Max nTPM: 17.0
Min nTPM: 13.1
Sample A Female 14.6
Sample B Female 17.0
Sample C Male 15.0
Sample D Male 13.1
Midbrain
nTPM: 16.0
Samples: 4

Max nTPM: 20.4
Min nTPM: 13.3
Sample A Female 13.3
Sample B Female 13.7
Sample C Male 20.4
Sample D Male 16.7
Periaqueductal gray
nTPM: 15.1
Samples: 3

Max nTPM: 17.7
Min nTPM: 13.5
Sample B Female 14.0
Sample C Male 17.7
Sample D Male 13.5
Superior colliculi
nTPM: 16.9
Samples: 4

Max nTPM: 21.1
Min nTPM: 13.1
Sample A Female 16.5
Sample B Female 13.1
Sample C Male 21.1
Sample D Male 17.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.7
Samples: 4

Max nTPM: 26.2
Min nTPM: 22.3
Sample A Male 22.8
Sample B Male 23.5
Sample C Female 26.2
Sample D Female 22.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
71920431 Antisense, RP_050915_01_E12, Mouse strain C57BL/6J (56 days, male) 0.9
70795793 Antisense, RP_050712_02_A02, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org