MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:79.5 nTPM
HPA Brain:223.3 nTPM
GTEx:79.5 nTPM
FANTOM5:611.8 Scaled Tags Per Million
Pig:93.9 nTPM
Mouse:29.2 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 223.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 161.0
1830 Male, age 51, unknown 202.0
1833 Male, age 53, unknown 198.9
2411 Female, age 72, unknown 189.9
2019 Male, age 18, unknown 185.3
1870 Female, age 42, unknown 168.5
2586 Male, age 75, left hemisphere 154.2
2828 Female, age 72, unknown 152.9
2666 Male, age 74, left hemisphere 142.2
2219 Male, age 76, both hemispheres 110.6
1827 Male, age 72, unknown 105.6
Dorsal raphe nucleus
nTPM: 106.3
2750 Male, age 76, both hemispheres 203.8
1828 Male, age 53, unknown 107.0
2016 Female, age 72, unknown 106.2
2047 Male, age 72, unknown 64.9
2298 Female, age 72, unknown 49.7
Inferior colliculus
nTPM: 96.3
2849 Male, age 72, unknown 109.6
1890 Male, age 53, unknown 105.5
1848 Female, age 42, unknown 99.7
2097 Female, age 72, unknown 70.2
Median raphe nucleus
nTPM: 87.3
2220 Male, age 76, midline 87.3
Periaquaductal grey, anterior
nTPM: 72.3
1947 Male, age 18, unknown 89.4
1795 Male, age 51, unknown 69.2
2502 Female, age 75, unknown 58.4
Periaquaductal grey, dorsal
nTPM: 65.4
2464 Female, age 72, unknown 117.0
1831 Male, age 72, unknown 69.7
1840 Male, age 53, unknown 37.5
2850 Male, age 76, both hemispheres 37.4
Periaquaductal grey, lateral
nTPM: 70.5
2272 Male, age 74, both hemispheres 94.0
2053 Male, age 18, unknown 78.1
2140 Male, age 76, both hemispheres 39.3
Pretectal area
nTPM: 92.4
2407 Male, age 75, both hemispheres 151.5
2316 Male, age 76, right hemisphere 147.5
1815 Male, age 53, unknown 133.6
1817 Female, age 42, unknown 103.2
2007 Male, age 72, unknown 96.9
2825 Male, age 18, unknown 94.2
2224 Female, age 72, unknown 66.3
2273 Male, age 74, both hemispheres 65.1
2667 Female, age 75, unknown 53.7
1944 Female, age 72, unknown 52.3
1816 Male, age 51, unknown 51.5
Red nucleus
nTPM: 223.3
2823 Male, age 76, right hemisphere 279.9
1865 Male, age 51, unknown 254.4
1904 Male, age 53, unknown 249.7
2769 Male, age 72, unknown 243.2
2227 Male, age 72, unknown 232.9
2785 Male, age 18, unknown 229.5
1821 Female, age 72, unknown 228.7
2588 Male, age 74, left hemisphere 208.3
2503 Female, age 72, unknown 196.6
2725 Female, age 75, unknown 193.0
2584 Male, age 75, left hemisphere 185.2
1954 Female, age 42, unknown 178.1
Substantia nigra
nTPM: 113.6
2590 Female, age 75, unknown 189.6
2583 Male, age 75, right hemisphere 159.0
1851 Male, age 51, unknown 127.9
2409 Female, age 72, unknown 119.0
1889 Female, age 72, unknown 114.3
2699 Male, age 18, unknown 104.5
1941 Male, age 53, unknown 89.6
2241 Male, age 72, unknown 80.9
1916 Female, age 42, unknown 75.8
2665 Male, age 74, both hemispheres 75.0
Superior colliculus
nTPM: 131.3
1913 Female, age 42, unknown 202.1
1995 Male, age 72, unknown 195.9
1895 Male, age 76, right hemisphere 172.1
2668 Female, age 75, unknown 154.8
1839 Male, age 51, unknown 134.5
2587 Male, age 74, left hemisphere 130.9
1796 Male, age 53, unknown 97.2
2664 Male, age 75, both hemispheres 90.9
2087 Female, age 72, unknown 70.9
2261 Male, age 18, unknown 63.7
Ventral tegmental area
nTPM: 125.5
2223 Female, age 72, unknown 188.5
2410 Female, age 72, unknown 157.8
1942 Male, age 51, unknown 107.6
2218 Male, age 76, both hemispheres 103.4
2021 Male, age 53, unknown 101.5
1915 Female, age 42, unknown 93.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.5
Samples: 139

Max nTPM: 338.8
Min nTPM: 10.2
Std nTPM: 49.4
Median nTPM: 66.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 338.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 246.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 229.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 217.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 205.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 174.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 173.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 167.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 166.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 159.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 158.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 611.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 611.8
FF:10158-103A5 76 years, female 611.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 93.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 93.9
Samples: 4

Max nTPM: 145.4
Min nTPM: 54.7
Sample A Female 93.9
Sample B Female 54.7
Sample C Male 81.6
Sample D Male 145.4
Midbrain
nTPM: 92.6
Samples: 4

Max nTPM: 164.1
Min nTPM: 53.7
Sample A Female 164.1
Sample B Female 91.5
Sample C Male 53.7
Sample D Male 60.9
Periaqueductal gray
nTPM: 59.9
Samples: 3

Max nTPM: 70.7
Min nTPM: 48.3
Sample B Female 70.7
Sample C Male 48.3
Sample D Male 60.7
Superior colliculi
nTPM: 70.5
Samples: 4

Max nTPM: 94.1
Min nTPM: 28.7
Sample A Female 87.0
Sample B Female 28.7
Sample C Male 72.2
Sample D Male 94.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.2
Samples: 4

Max nTPM: 32.3
Min nTPM: 26.3
Sample A Male 26.3
Sample B Male 26.7
Sample C Female 32.3
Sample D Female 31.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
70295805 Antisense, RP_050531_03_H09, Mouse strain C57BL/6J (56 days, male) 0.9

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