MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.7 nTPM
HPA Brain:29.2 nTPM
GTEx:25.7 nTPM
FANTOM5:55.5 Scaled Tags Per Million
Pig:25.5 nTPM
Mouse:71.8 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.5
2019 Male, age 18, unknown 28.5
2411 Female, age 72, unknown 26.8
2586 Male, age 75, left hemisphere 26.5
1827 Male, age 72, unknown 26.0
1870 Female, age 42, unknown 25.1
2219 Male, age 76, both hemispheres 24.2
1833 Male, age 53, unknown 23.9
2666 Male, age 74, left hemisphere 22.8
1830 Male, age 51, unknown 20.9
2828 Female, age 72, unknown 20.5
Dorsal raphe nucleus
nTPM: 27.3
2298 Female, age 72, unknown 31.2
2047 Male, age 72, unknown 30.1
2750 Male, age 76, both hemispheres 26.7
1828 Male, age 53, unknown 26.6
2016 Female, age 72, unknown 22.0
Inferior colliculus
nTPM: 23.4
2097 Female, age 72, unknown 26.0
1890 Male, age 53, unknown 25.6
1848 Female, age 42, unknown 22.1
2849 Male, age 72, unknown 19.7
Median raphe nucleus
nTPM: 23.7
2220 Male, age 76, midline 23.7
Periaquaductal grey, anterior
nTPM: 22.7
1795 Male, age 51, unknown 23.5
1947 Male, age 18, unknown 22.3
2502 Female, age 75, unknown 22.2
Periaquaductal grey, dorsal
nTPM: 20.8
1840 Male, age 53, unknown 21.2
2850 Male, age 76, both hemispheres 21.0
2464 Female, age 72, unknown 20.9
1831 Male, age 72, unknown 20.3
Periaquaductal grey, lateral
nTPM: 22.4
2272 Male, age 74, both hemispheres 24.9
2140 Male, age 76, both hemispheres 23.0
2053 Male, age 18, unknown 19.3
Pretectal area
nTPM: 27.3
1817 Female, age 42, unknown 34.5
2007 Male, age 72, unknown 32.2
1816 Male, age 51, unknown 32.0
1944 Female, age 72, unknown 30.0
1815 Male, age 53, unknown 27.7
2273 Male, age 74, both hemispheres 26.8
2407 Male, age 75, both hemispheres 25.4
2667 Female, age 75, unknown 24.6
2224 Female, age 72, unknown 24.5
2316 Male, age 76, right hemisphere 21.4
2825 Male, age 18, unknown 21.1
Red nucleus
nTPM: 23.5
2785 Male, age 18, unknown 29.1
1821 Female, age 72, unknown 28.1
2725 Female, age 75, unknown 25.6
1865 Male, age 51, unknown 24.4
2584 Male, age 75, left hemisphere 23.4
2503 Female, age 72, unknown 22.3
2588 Male, age 74, left hemisphere 22.3
1954 Female, age 42, unknown 22.2
2769 Male, age 72, unknown 21.7
2227 Male, age 72, unknown 21.6
1904 Male, age 53, unknown 21.3
2823 Male, age 76, right hemisphere 20.3
Substantia nigra
nTPM: 29.2
1916 Female, age 42, unknown 40.1
1851 Male, age 51, unknown 34.3
1889 Female, age 72, unknown 32.9
2241 Male, age 72, unknown 31.2
1941 Male, age 53, unknown 30.3
2665 Male, age 74, both hemispheres 26.1
2583 Male, age 75, right hemisphere 26.0
2699 Male, age 18, unknown 26.0
2590 Female, age 75, unknown 24.1
2409 Female, age 72, unknown 20.6
Superior colliculus
nTPM: 24.4
2668 Female, age 75, unknown 29.5
2087 Female, age 72, unknown 28.0
2261 Male, age 18, unknown 27.5
1796 Male, age 53, unknown 25.4
2587 Male, age 74, left hemisphere 24.4
1895 Male, age 76, right hemisphere 24.0
1913 Female, age 42, unknown 22.2
1995 Male, age 72, unknown 22.2
2664 Male, age 75, both hemispheres 21.3
1839 Male, age 51, unknown 19.8
Ventral tegmental area
nTPM: 27.0
2410 Female, age 72, unknown 32.0
1915 Female, age 42, unknown 30.1
2218 Male, age 76, both hemispheres 26.3
1942 Male, age 51, unknown 25.0
2223 Female, age 72, unknown 24.8
2021 Male, age 53, unknown 24.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.7
Samples: 139

Max nTPM: 49.0
Min nTPM: 12.7
Std nTPM: 7.7
Median nTPM: 24.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 49.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 47.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 43.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 43.6
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 43.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 41.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 41.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 41.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 40.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 39.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 38.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.5
FF:10158-103A5 76 years, female 55.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.5
Samples: 4

Max nTPM: 26.7
Min nTPM: 18.3
Sample A Female 26.7
Sample B Female 18.3
Sample C Male 21.2
Sample D Male 19.7
Midbrain
nTPM: 25.2
Samples: 4

Max nTPM: 28.8
Min nTPM: 22.3
Sample A Female 28.8
Sample B Female 23.0
Sample C Male 26.8
Sample D Male 22.3
Periaqueductal gray
nTPM: 20.0
Samples: 3

Max nTPM: 21.0
Min nTPM: 18.1
Sample B Female 20.9
Sample C Male 21.0
Sample D Male 18.1
Superior colliculi
nTPM: 25.5
Samples: 4

Max nTPM: 29.8
Min nTPM: 21.2
Sample A Female 28.4
Sample B Female 21.2
Sample C Male 29.8
Sample D Male 22.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 71.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.8
Samples: 4

Max nTPM: 75.0
Min nTPM: 68.6
Sample A Male 68.6
Sample B Male 69.0
Sample C Female 75.0
Sample D Female 74.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
67978660 Antisense, RP_040923_01_D12, Mouse strain C57BL/6J (56 days, male) 0.4

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