MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:497.2 nTPM
HPA Brain:185.4 nTPM
GTEx:497.2 nTPM
FANTOM5:114.9 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 185.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.5
2586 Male, age 75, left hemisphere 162.5
2828 Female, age 72, unknown 126.3
1827 Male, age 72, unknown 106.0
1833 Male, age 53, unknown 89.1
1870 Female, age 42, unknown 87.0
1830 Male, age 51, unknown 75.3
2411 Female, age 72, unknown 54.6
2019 Male, age 18, unknown 48.4
2666 Male, age 74, left hemisphere 38.5
2219 Male, age 76, both hemispheres 37.4
Dorsal raphe nucleus
nTPM: 125.3
1828 Male, age 53, unknown 242.2
2016 Female, age 72, unknown 151.6
2047 Male, age 72, unknown 112.4
2298 Female, age 72, unknown 68.9
2750 Male, age 76, both hemispheres 51.5
Inferior colliculus
nTPM: 151.7
2097 Female, age 72, unknown 180.1
1848 Female, age 42, unknown 162.7
1890 Male, age 53, unknown 134.8
2849 Male, age 72, unknown 129.3
Median raphe nucleus
nTPM: 56.3
2220 Male, age 76, midline 56.3
Periaquaductal grey, anterior
nTPM: 134.3
2502 Female, age 75, unknown 180.0
1795 Male, age 51, unknown 132.0
1947 Male, age 18, unknown 90.9
Periaquaductal grey, dorsal
nTPM: 112.0
1840 Male, age 53, unknown 130.2
2850 Male, age 76, both hemispheres 128.6
2464 Female, age 72, unknown 112.0
1831 Male, age 72, unknown 77.2
Periaquaductal grey, lateral
nTPM: 152.8
2140 Male, age 76, both hemispheres 162.4
2272 Male, age 74, both hemispheres 150.1
2053 Male, age 18, unknown 146.0
Pretectal area
nTPM: 122.6
2273 Male, age 74, both hemispheres 287.1
1944 Female, age 72, unknown 160.5
2825 Male, age 18, unknown 141.1
2316 Male, age 76, right hemisphere 139.2
2667 Female, age 75, unknown 137.2
1816 Male, age 51, unknown 132.7
2224 Female, age 72, unknown 104.0
1817 Female, age 42, unknown 75.9
2007 Male, age 72, unknown 64.4
2407 Male, age 75, both hemispheres 58.7
1815 Male, age 53, unknown 48.2
Red nucleus
nTPM: 119.0
1821 Female, age 72, unknown 179.8
2503 Female, age 72, unknown 175.3
2725 Female, age 75, unknown 153.8
2769 Male, age 72, unknown 146.6
2227 Male, age 72, unknown 140.4
2823 Male, age 76, right hemisphere 127.8
1954 Female, age 42, unknown 121.9
2588 Male, age 74, left hemisphere 112.4
1865 Male, age 51, unknown 73.5
1904 Male, age 53, unknown 71.6
2584 Male, age 75, left hemisphere 66.7
2785 Male, age 18, unknown 58.9
Substantia nigra
nTPM: 185.4
2699 Male, age 18, unknown 303.1
1916 Female, age 42, unknown 280.0
1851 Male, age 51, unknown 241.0
2241 Male, age 72, unknown 235.2
2409 Female, age 72, unknown 198.9
2590 Female, age 75, unknown 170.2
2583 Male, age 75, right hemisphere 118.3
1889 Female, age 72, unknown 117.7
1941 Male, age 53, unknown 97.3
2665 Male, age 74, both hemispheres 92.6
Superior colliculus
nTPM: 128.7
2261 Male, age 18, unknown 214.6
2587 Male, age 74, left hemisphere 197.6
1796 Male, age 53, unknown 159.5
1839 Male, age 51, unknown 156.9
2664 Male, age 75, both hemispheres 137.4
2087 Female, age 72, unknown 124.1
1995 Male, age 72, unknown 95.0
1895 Male, age 76, right hemisphere 89.3
1913 Female, age 42, unknown 64.5
2668 Female, age 75, unknown 47.8
Ventral tegmental area
nTPM: 138.0
2021 Male, age 53, unknown 198.9
1915 Female, age 42, unknown 183.6
2410 Female, age 72, unknown 180.8
2218 Male, age 76, both hemispheres 98.9
2223 Female, age 72, unknown 85.3
1942 Male, age 51, unknown 80.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 497.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 497.2
Samples: 139

Max nTPM: 2544.5
Min nTPM: 30.2
Std nTPM: 418.1
Median nTPM: 367.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 2544.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2248.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 2219.3
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 1683.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1322.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 1281.0
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 1208.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1174.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 1143.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1091.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 1004.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 114.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 114.9
FF:10158-103A5 76 years, female 114.9

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