HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:30.5 nTPM
HPA Brain:48.3 nTPM
GTEx:30.5 nTPM
FANTOM5:125.7 Scaled Tags Per Million
Pig:53.8 nTPM
Mouse:106.4 nTPM
Allen mouse:11.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA005657
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 48.3
Sample id Sample description nTPM
Hippocampus
nTPM: 43.6
1898 Male, age 80, left hemisphere 51.2
1855 Male, age 76, left hemisphere 48.9
1911 Female, age 85, right hemisphere 46.1
2621 Female, age 67, right hemisphere 43.2
2529 Female, age 94, left hemisphere 36.3
2148 Female, age 91, left hemisphere 35.7
Dentate gyrus
nTPM: 43.3
2010 Male, age 76, both hemispheres 50.3
1927 Female, age 91, both hemispheres 47.3
2530 Female, age 94, left hemisphere 43.4
2246 Female, age 85, both hemispheres 42.8
2528 Male, age 74, both hemispheres 42.0
2531 Female, age 67, both hemispheres 34.1
Entorhinal gyrus
nTPM: 38.2
1938 Female, age 85, left hemisphere 45.0
2117 Female, age 91, right hemisphere 42.8
1787 Male, age 76, left hemisphere 42.6
2764 Male, age 80, right hemisphere 37.9
2613 Female, age 94, left hemisphere 34.1
2686 Male, age 75, right hemisphere 26.9
Hippocampus, CA1
nTPM: 48.3
2749 Male, age 80, left hemisphere 55.7
2045 Male, age 76, both hemispheres 53.2
1873 Female, age 85, both hemispheres 51.0
2527 Male, age 74, both hemispheres 42.0
2082 Female, age 91, right hemisphere 39.6
Hippocampus, CA2
nTPM: 46.7
1892 Male, age 76, both hemispheres 60.6
2249 Male, age 74, both hemispheres 54.9
1963 Male, age 80, left hemisphere 45.4
1940 Female, age 85, left hemisphere 42.8
2113 Female, age 91, right hemisphere 38.8
2437 Female, age 94, left hemisphere 37.7
Hippocampus, CA3
nTPM: 44.5
1867 Male, age 76, both hemispheres 52.2
2436 Male, age 74, both hemispheres 51.6
2137 Male, age 80, left hemisphere 49.2
1891 Female, age 85, both hemispheres 46.5
2620 Female, age 94, left hemisphere 35.3
2861 Female, age 67, both hemispheres 31.9
Parahippocampal cortex
nTPM: 39.7
1850 Male, age 80, both hemispheres 47.6
2250 Female, age 67, right hemisphere 46.3
1933 Female, age 85, both hemispheres 45.3
1990 Female, age 91, right hemisphere 42.4
2018 Male, age 76, both hemispheres 41.8
2693 Female, age 94, both hemispheres 39.6
2532 Female, age 72, left hemisphere 38.9
2245 Female, age 91, both hemispheres 37.3
2692 Male, age 74, both hemispheres 30.0
2622 Female, age 67, right hemisphere 27.9
Perirhinal gyrus
nTPM: 47.3
1841 Female, age 85, right hemisphere 51.3
1847 Female, age 91, left hemisphere 47.5
1794 Male, age 80, right hemisphere 47.1
2848 Male, age 76, right hemisphere 47.0
2521 Female, age 94, right hemisphere 43.7
Subiculum
nTPM: 40.9
1901 Male, age 80, both hemispheres 46.2
1977 Female, age 85, both hemispheres 46.0
2042 Male, age 76, both hemispheres 42.1
2438 Female, age 94, left hemisphere 39.0
2729 Female, age 91, right hemisphere 38.1
2619 Male, age 74, both hemispheres 33.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 30.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.5
Samples: 197

Max nTPM: 50.9
Min nTPM: 16.5
Std nTPM: 5.4
Median nTPM: 30.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 50.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 50.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 43.8
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 41.6
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 40.6
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 40.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 40.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 40.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 40.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 40.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 38.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 125.7
FF:10169-103B7 60 years, female 149.5
FF:10153-102I9 76 years, female 101.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 53.8
Pig sample Sample description nTPM
Subiculum
nTPM: 49.3
Samples: 4

Max nTPM: 59.0
Min nTPM: 44.6
Sample A Female 59.0
Sample B Female 44.6
Sample C Male 46.0
Sample D Male 47.6
Dorsal hippocampus
nTPM: 53.8
Samples: 4

Max nTPM: 68.9
Min nTPM: 39.6
Sample A Female 68.9
Sample B Female 52.9
Sample C Male 53.9
Sample D Male 39.6
Entorhinal cortex
nTPM: 47.0
Samples: 4

Max nTPM: 52.3
Min nTPM: 38.7
Sample A Female 52.3
Sample B Female 49.8
Sample C Male 47.2
Sample D Male 38.7
Ventral hippocampus
nTPM: 48.6
Samples: 4

Max nTPM: 52.3
Min nTPM: 38.3
Sample A Female 52.0
Sample B Female 38.3
Sample C Male 52.3
Sample D Male 51.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 106.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 106.4
Samples: 4

Max nTPM: 116.5
Min nTPM: 99.6
Sample A Male 99.6
Sample B Male 104.2
Sample C Female 105.2
Sample D Female 116.5
Hippocampal formation
nTPM: 100.3
Samples: 4

Max nTPM: 104.8
Min nTPM: 97.4
Sample A Male 99.5
Sample B Male 99.4
Sample C Female 104.8
Sample D Female 97.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.8
513255 Antisense, RP_040810_01_E11, Mouse strain C57BL/6J (56 days, male) 13.7
77620377 Antisense, RP_070205_01_D11, Mouse strain C57BL/6J (56 days, male) 9.9

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