HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:10.8 nTPM
HPA Brain:23.1 nTPM
GTEx:10.8 nTPM
FANTOM5:20.3 Scaled Tags Per Million
Pig:38.2 nTPM
Mouse:58.0 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003459Antibody HPA005665
Glial cells LowNot detected
Neuronal cells Not detectedLow




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 23.1
Sample id Sample description nTPM
Hippocampus
nTPM: 14.1
2621 Female, age 67, right hemisphere 18.5
2529 Female, age 94, left hemisphere 16.4
1898 Male, age 80, left hemisphere 14.8
1911 Female, age 85, right hemisphere 13.3
1855 Male, age 76, left hemisphere 10.9
2148 Female, age 91, left hemisphere 10.5
Dentate gyrus
nTPM: 13.1
2530 Female, age 94, left hemisphere 15.6
1927 Female, age 91, both hemispheres 14.2
2246 Female, age 85, both hemispheres 13.5
2528 Male, age 74, both hemispheres 13.5
2531 Female, age 67, both hemispheres 12.0
2010 Male, age 76, both hemispheres 9.7
Entorhinal gyrus
nTPM: 20.7
2764 Male, age 80, right hemisphere 24.1
1787 Male, age 76, left hemisphere 23.8
2613 Female, age 94, left hemisphere 22.1
1938 Female, age 85, left hemisphere 21.5
2686 Male, age 75, right hemisphere 18.9
2117 Female, age 91, right hemisphere 14.0
Hippocampus, CA1
nTPM: 15.0
2749 Male, age 80, left hemisphere 25.1
2527 Male, age 74, both hemispheres 16.7
2082 Female, age 91, right hemisphere 14.5
1873 Female, age 85, both hemispheres 9.9
2045 Male, age 76, both hemispheres 8.8
Hippocampus, CA2
nTPM: 16.3
2437 Female, age 94, left hemisphere 22.2
1892 Male, age 76, both hemispheres 18.2
2249 Male, age 74, both hemispheres 15.1
1940 Female, age 85, left hemisphere 14.9
2113 Female, age 91, right hemisphere 14.1
1963 Male, age 80, left hemisphere 12.9
Hippocampus, CA3
nTPM: 15.9
2137 Male, age 80, left hemisphere 25.8
1867 Male, age 76, both hemispheres 18.8
2436 Male, age 74, both hemispheres 18.3
1891 Female, age 85, both hemispheres 12.6
2861 Female, age 67, both hemispheres 11.4
2620 Female, age 94, left hemisphere 8.6
Parahippocampal cortex
nTPM: 21.0
1990 Female, age 91, right hemisphere 24.6
2245 Female, age 91, both hemispheres 24.6
2250 Female, age 67, right hemisphere 24.5
1850 Male, age 80, both hemispheres 21.7
2693 Female, age 94, both hemispheres 20.9
2622 Female, age 67, right hemisphere 20.6
2532 Female, age 72, left hemisphere 20.5
1933 Female, age 85, both hemispheres 19.3
2692 Male, age 74, both hemispheres 19.0
2018 Male, age 76, both hemispheres 14.7
Perirhinal gyrus
nTPM: 23.1
1847 Female, age 91, left hemisphere 28.4
2848 Male, age 76, right hemisphere 22.5
1841 Female, age 85, right hemisphere 22.1
1794 Male, age 80, right hemisphere 21.9
2521 Female, age 94, right hemisphere 20.7
Subiculum
nTPM: 18.5
2438 Female, age 94, left hemisphere 22.8
1977 Female, age 85, both hemispheres 20.1
2619 Male, age 74, both hemispheres 19.9
1901 Male, age 80, both hemispheres 19.4
2042 Male, age 76, both hemispheres 16.5
2729 Female, age 91, right hemisphere 12.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.8
Samples: 197

Max nTPM: 26.5
Min nTPM: 2.7
Std nTPM: 4.8
Median nTPM: 9.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 26.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 24.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 23.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 22.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 22.7
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 22.0
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 21.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 21.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 21.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 20.7
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 20.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 20.3
FF:10169-103B7 60 years, female 22.8
FF:10153-102I9 76 years, female 17.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 38.2
Pig sample Sample description nTPM
Subiculum
nTPM: 30.8
Samples: 4

Max nTPM: 36.2
Min nTPM: 28.4
Sample A Female 36.2
Sample B Female 28.5
Sample C Male 29.9
Sample D Male 28.4
Dorsal hippocampus
nTPM: 38.2
Samples: 4

Max nTPM: 43.2
Min nTPM: 29.6
Sample A Female 38.7
Sample B Female 43.2
Sample C Male 41.4
Sample D Male 29.6
Entorhinal cortex
nTPM: 34.0
Samples: 4

Max nTPM: 37.4
Min nTPM: 29.1
Sample A Female 33.5
Sample B Female 36.1
Sample C Male 29.1
Sample D Male 37.4
Ventral hippocampus
nTPM: 30.6
Samples: 4

Max nTPM: 51.2
Min nTPM: 18.4
Sample A Female 18.4
Sample B Female 30.7
Sample C Male 21.9
Sample D Male 51.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 58.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 58.0
Samples: 4

Max nTPM: 65.7
Min nTPM: 54.5
Sample A Male 56.5
Sample B Male 65.7
Sample C Female 54.5
Sample D Female 55.4
Hippocampal formation
nTPM: 49.0
Samples: 4

Max nTPM: 56.6
Min nTPM: 43.8
Sample A Male 56.6
Sample B Male 49.4
Sample C Female 43.8
Sample D Female 46.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
532648 Antisense, RP_040825_01_A04, Mouse strain C57BL/6J (56 days, male) 0.2

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