HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:22.7 nTPM
HPA Brain:18.8 nTPM
GTEx:22.7 nTPM
FANTOM5:13.5 Scaled Tags Per Million
Pig:6.2 nTPM
Mouse:17.5 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041924Antibody HPA041951
Glial cells Not detectedLow
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 18.8
Sample id Sample description nTPM
Hippocampus
nTPM: 17.8
1898 Male, age 80, left hemisphere 19.3
2529 Female, age 94, left hemisphere 19.1
2621 Female, age 67, right hemisphere 18.3
1911 Female, age 85, right hemisphere 17.6
2148 Female, age 91, left hemisphere 17.6
1855 Male, age 76, left hemisphere 15.0
Dentate gyrus
nTPM: 16.8
2528 Male, age 74, both hemispheres 20.4
2530 Female, age 94, left hemisphere 19.4
2246 Female, age 85, both hemispheres 15.9
2531 Female, age 67, both hemispheres 15.8
1927 Female, age 91, both hemispheres 15.5
2010 Male, age 76, both hemispheres 13.6
Entorhinal gyrus
nTPM: 18.3
2117 Female, age 91, right hemisphere 23.9
2686 Male, age 75, right hemisphere 20.2
2764 Male, age 80, right hemisphere 18.8
1938 Female, age 85, left hemisphere 17.1
2613 Female, age 94, left hemisphere 16.5
1787 Male, age 76, left hemisphere 13.2
Hippocampus, CA1
nTPM: 15.9
2527 Male, age 74, both hemispheres 18.9
2082 Female, age 91, right hemisphere 17.0
1873 Female, age 85, both hemispheres 14.7
2749 Male, age 80, left hemisphere 14.5
2045 Male, age 76, both hemispheres 14.2
Hippocampus, CA2
nTPM: 18.8
1963 Male, age 80, left hemisphere 21.4
2113 Female, age 91, right hemisphere 19.5
1940 Female, age 85, left hemisphere 18.9
2437 Female, age 94, left hemisphere 18.3
1892 Male, age 76, both hemispheres 17.9
2249 Male, age 74, both hemispheres 16.6
Hippocampus, CA3
nTPM: 17.2
2436 Male, age 74, both hemispheres 23.1
2861 Female, age 67, both hemispheres 19.1
1891 Female, age 85, both hemispheres 17.2
1867 Male, age 76, both hemispheres 16.4
2620 Female, age 94, left hemisphere 13.8
2137 Male, age 80, left hemisphere 13.6
Parahippocampal cortex
nTPM: 16.7
2692 Male, age 74, both hemispheres 19.3
2622 Female, age 67, right hemisphere 19.1
1990 Female, age 91, right hemisphere 18.9
2245 Female, age 91, both hemispheres 17.7
1850 Male, age 80, both hemispheres 17.5
2250 Female, age 67, right hemisphere 16.8
2018 Male, age 76, both hemispheres 15.7
2532 Female, age 72, left hemisphere 15.7
1933 Female, age 85, both hemispheres 15.4
2693 Female, age 94, both hemispheres 10.6
Perirhinal gyrus
nTPM: 14.2
1847 Female, age 91, left hemisphere 16.0
1794 Male, age 80, right hemisphere 15.0
1841 Female, age 85, right hemisphere 15.0
2521 Female, age 94, right hemisphere 13.0
2848 Male, age 76, right hemisphere 12.1
Subiculum
nTPM: 16.6
2619 Male, age 74, both hemispheres 19.9
2729 Female, age 91, right hemisphere 19.4
2042 Male, age 76, both hemispheres 18.0
1901 Male, age 80, both hemispheres 16.7
1977 Female, age 85, both hemispheres 15.6
2438 Female, age 94, left hemisphere 9.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 22.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.7
Samples: 197

Max nTPM: 37.9
Min nTPM: 12.1
Std nTPM: 4.6
Median nTPM: 22.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 37.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 36.6
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 36.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 35.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 33.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 33.4
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 33.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 32.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 32.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 32.1
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 31.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 13.5
FF:10153-102I9 76 years, female 16.8
FF:10169-103B7 60 years, female 10.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 6.2
Pig sample Sample description nTPM
Subiculum
nTPM: 5.8
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 5.7
Sample C Male 6.0
Sample D Male 6.7
Dorsal hippocampus
nTPM: 5.8
Samples: 4

Max nTPM: 6.2
Min nTPM: 5.5
Sample A Female 5.5
Sample B Female 5.6
Sample C Male 5.7
Sample D Male 6.2
Entorhinal cortex
nTPM: 5.7
Samples: 4

Max nTPM: 6.6
Min nTPM: 5.3
Sample A Female 5.5
Sample B Female 5.4
Sample C Male 5.3
Sample D Male 6.6
Ventral hippocampus
nTPM: 6.2
Samples: 4

Max nTPM: 6.5
Min nTPM: 5.7
Sample A Female 5.7
Sample B Female 6.5
Sample C Male 6.5
Sample D Male 5.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 17.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 15.4
Samples: 4

Max nTPM: 16.6
Min nTPM: 14.0
Sample A Male 15.7
Sample B Male 15.2
Sample C Female 16.6
Sample D Female 14.0
Hippocampal formation
nTPM: 17.5
Samples: 4

Max nTPM: 19.9
Min nTPM: 15.7
Sample A Male 16.0
Sample B Male 15.7
Sample C Female 18.3
Sample D Female 19.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
1620 Antisense, RP_040428_01_G01, Mouse strain C57BL/6J (56 days, male) 0.4
1619 Antisense, RP_040428_01_G01, Mouse strain C57BL/6J (56 days, male) 0.2

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