HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:10.2 nTPM
HPA Brain:21.0 nTPM
GTEx:10.2 nTPM
FANTOM5:37.7 Scaled Tags Per Million
Pig:36.9 nTPM
Mouse:18.7 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA008440
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 21.0
Sample id Sample description nTPM
Hippocampus
nTPM: 18.4
1855 Male, age 76, left hemisphere 20.6
1898 Male, age 80, left hemisphere 19.8
2148 Female, age 91, left hemisphere 18.5
1911 Female, age 85, right hemisphere 17.7
2621 Female, age 67, right hemisphere 17.2
2529 Female, age 94, left hemisphere 16.8
Dentate gyrus
nTPM: 18.8
1927 Female, age 91, both hemispheres 20.3
2531 Female, age 67, both hemispheres 19.7
2010 Male, age 76, both hemispheres 19.2
2528 Male, age 74, both hemispheres 18.3
2530 Female, age 94, left hemisphere 17.7
2246 Female, age 85, both hemispheres 17.6
Entorhinal gyrus
nTPM: 17.0
1938 Female, age 85, left hemisphere 19.6
2613 Female, age 94, left hemisphere 17.8
1787 Male, age 76, left hemisphere 17.4
2686 Male, age 75, right hemisphere 16.9
2764 Male, age 80, right hemisphere 15.9
2117 Female, age 91, right hemisphere 14.3
Hippocampus, CA1
nTPM: 21.0
2749 Male, age 80, left hemisphere 26.5
1873 Female, age 85, both hemispheres 21.2
2045 Male, age 76, both hemispheres 20.3
2082 Female, age 91, right hemisphere 19.0
2527 Male, age 74, both hemispheres 18.1
Hippocampus, CA2
nTPM: 19.3
1892 Male, age 76, both hemispheres 23.5
1963 Male, age 80, left hemisphere 21.4
1940 Female, age 85, left hemisphere 20.2
2437 Female, age 94, left hemisphere 17.7
2113 Female, age 91, right hemisphere 16.8
2249 Male, age 74, both hemispheres 16.1
Hippocampus, CA3
nTPM: 20.4
2137 Male, age 80, left hemisphere 25.3
1867 Male, age 76, both hemispheres 23.2
2861 Female, age 67, both hemispheres 20.4
2620 Female, age 94, left hemisphere 18.9
1891 Female, age 85, both hemispheres 18.4
2436 Male, age 74, both hemispheres 16.2
Parahippocampal cortex
nTPM: 17.4
2693 Female, age 94, both hemispheres 21.2
1850 Male, age 80, both hemispheres 19.6
1933 Female, age 85, both hemispheres 18.8
2018 Male, age 76, both hemispheres 18.2
2245 Female, age 91, both hemispheres 17.3
2622 Female, age 67, right hemisphere 17.2
2250 Female, age 67, right hemisphere 16.2
1990 Female, age 91, right hemisphere 15.8
2692 Male, age 74, both hemispheres 15.0
2532 Female, age 72, left hemisphere 14.6
Perirhinal gyrus
nTPM: 18.1
1847 Female, age 91, left hemisphere 20.4
2521 Female, age 94, right hemisphere 19.0
1841 Female, age 85, right hemisphere 17.4
2848 Male, age 76, right hemisphere 17.2
1794 Male, age 80, right hemisphere 16.5
Subiculum
nTPM: 16.2
2729 Female, age 91, right hemisphere 18.1
1901 Male, age 80, both hemispheres 17.8
2619 Male, age 74, both hemispheres 15.8
1977 Female, age 85, both hemispheres 15.7
2042 Male, age 76, both hemispheres 15.6
2438 Female, age 94, left hemisphere 14.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.2
Samples: 197

Max nTPM: 22.4
Min nTPM: 3.7
Std nTPM: 3.2
Median nTPM: 9.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 22.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 18.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 18.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 17.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 17.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 16.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 16.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 16.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 16.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 16.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 16.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 37.7
FF:10169-103B7 60 years, female 41.5
FF:10153-102I9 76 years, female 33.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 36.9
Pig sample Sample description nTPM
Subiculum
nTPM: 29.6
Samples: 4

Max nTPM: 33.0
Min nTPM: 27.8
Sample A Female 33.0
Sample B Female 28.1
Sample C Male 29.4
Sample D Male 27.8
Dorsal hippocampus
nTPM: 30.6
Samples: 4

Max nTPM: 34.4
Min nTPM: 26.1
Sample A Female 34.4
Sample B Female 30.6
Sample C Male 31.2
Sample D Male 26.1
Entorhinal cortex
nTPM: 36.9
Samples: 4

Max nTPM: 45.2
Min nTPM: 32.0
Sample A Female 33.2
Sample B Female 45.2
Sample C Male 37.2
Sample D Male 32.0
Ventral hippocampus
nTPM: 28.6
Samples: 4

Max nTPM: 34.1
Min nTPM: 24.0
Sample A Female 26.0
Sample B Female 24.0
Sample C Male 30.3
Sample D Male 34.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 18.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 18.7
Samples: 4

Max nTPM: 20.0
Min nTPM: 16.7
Sample A Male 18.5
Sample B Male 16.7
Sample C Female 20.0
Sample D Female 19.6
Hippocampal formation
nTPM: 17.2
Samples: 4

Max nTPM: 20.9
Min nTPM: 12.7
Sample A Male 16.1
Sample B Male 18.9
Sample C Female 20.9
Sample D Female 12.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
71920479 Antisense, RP_050915_02_A02, Mouse strain C57BL/6J (56 days, male) 0.1

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