MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.5 nTPM
HPA Brain:18.4 nTPM
GTEx:9.5 nTPM
FANTOM5:32.7 Scaled Tags Per Million
Pig:25.3 nTPM
Mouse:16.5 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.8
2019 Male, age 18, unknown 19.7
2586 Male, age 75, left hemisphere 19.1
1827 Male, age 72, unknown 18.0
2666 Male, age 74, left hemisphere 17.2
2219 Male, age 76, both hemispheres 15.0
2411 Female, age 72, unknown 14.7
1870 Female, age 42, unknown 14.3
2828 Female, age 72, unknown 13.8
1830 Male, age 51, unknown 13.3
1833 Male, age 53, unknown 12.6
Dorsal raphe nucleus
nTPM: 14.3
1828 Male, age 53, unknown 15.1
2016 Female, age 72, unknown 14.6
2047 Male, age 72, unknown 14.4
2298 Female, age 72, unknown 14.2
2750 Male, age 76, both hemispheres 13.2
Inferior colliculus
nTPM: 14.3
2097 Female, age 72, unknown 16.2
1890 Male, age 53, unknown 15.7
1848 Female, age 42, unknown 13.5
2849 Male, age 72, unknown 11.7
Median raphe nucleus
nTPM: 15.2
2220 Male, age 76, midline 15.2
Periaquaductal grey, anterior
nTPM: 15.9
1947 Male, age 18, unknown 16.0
2502 Female, age 75, unknown 15.9
1795 Male, age 51, unknown 15.7
Periaquaductal grey, dorsal
nTPM: 14.6
1831 Male, age 72, unknown 16.1
1840 Male, age 53, unknown 15.1
2464 Female, age 72, unknown 14.7
2850 Male, age 76, both hemispheres 12.3
Periaquaductal grey, lateral
nTPM: 14.5
2053 Male, age 18, unknown 15.3
2140 Male, age 76, both hemispheres 14.4
2272 Male, age 74, both hemispheres 13.7
Pretectal area
nTPM: 18.4
1816 Male, age 51, unknown 25.1
1817 Female, age 42, unknown 22.5
1944 Female, age 72, unknown 21.3
1815 Male, age 53, unknown 21.0
2007 Male, age 72, unknown 21.0
2407 Male, age 75, both hemispheres 17.1
2667 Female, age 75, unknown 16.8
2316 Male, age 76, right hemisphere 15.2
2273 Male, age 74, both hemispheres 14.3
2825 Male, age 18, unknown 14.2
2224 Female, age 72, unknown 14.1
Red nucleus
nTPM: 14.5
2584 Male, age 75, left hemisphere 17.2
2725 Female, age 75, unknown 16.9
1821 Female, age 72, unknown 16.3
2588 Male, age 74, left hemisphere 15.8
2785 Male, age 18, unknown 15.3
1865 Male, age 51, unknown 14.7
2503 Female, age 72, unknown 14.2
1904 Male, age 53, unknown 13.8
1954 Female, age 42, unknown 13.2
2823 Male, age 76, right hemisphere 13.1
2769 Male, age 72, unknown 11.9
2227 Male, age 72, unknown 11.6
Substantia nigra
nTPM: 17.5
2241 Male, age 72, unknown 22.6
2665 Male, age 74, both hemispheres 19.7
1889 Female, age 72, unknown 19.2
1916 Female, age 42, unknown 18.7
1941 Male, age 53, unknown 17.8
1851 Male, age 51, unknown 17.7
2583 Male, age 75, right hemisphere 15.5
2409 Female, age 72, unknown 15.3
2699 Male, age 18, unknown 14.3
2590 Female, age 75, unknown 14.2
Superior colliculus
nTPM: 16.8
2664 Male, age 75, both hemispheres 20.9
2087 Female, age 72, unknown 19.6
2668 Female, age 75, unknown 18.6
2261 Male, age 18, unknown 17.9
1895 Male, age 76, right hemisphere 15.7
1995 Male, age 72, unknown 15.3
1796 Male, age 53, unknown 15.2
2587 Male, age 74, left hemisphere 15.1
1839 Male, age 51, unknown 14.8
1913 Female, age 42, unknown 14.7
Ventral tegmental area
nTPM: 14.4
2410 Female, age 72, unknown 16.6
1915 Female, age 42, unknown 15.5
2218 Male, age 76, both hemispheres 14.6
2021 Male, age 53, unknown 13.8
1942 Male, age 51, unknown 13.2
2223 Female, age 72, unknown 12.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.5
Samples: 139

Max nTPM: 23.0
Min nTPM: 4.9
Std nTPM: 2.8
Median nTPM: 9.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 23.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 19.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 19.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 17.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 17.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 14.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 14.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 14.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 13.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 13.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 13.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.7
FF:10158-103A5 76 years, female 32.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.8
Samples: 4

Max nTPM: 25.4
Min nTPM: 20.2
Sample A Female 23.3
Sample B Female 20.2
Sample C Male 25.4
Sample D Male 22.2
Midbrain
nTPM: 25.3
Samples: 4

Max nTPM: 29.2
Min nTPM: 22.9
Sample A Female 22.9
Sample B Female 23.4
Sample C Male 29.2
Sample D Male 25.8
Periaqueductal gray
nTPM: 21.1
Samples: 3

Max nTPM: 22.3
Min nTPM: 19.1
Sample B Female 22.3
Sample C Male 22.0
Sample D Male 19.1
Superior colliculi
nTPM: 24.2
Samples: 4

Max nTPM: 30.6
Min nTPM: 18.2
Sample A Female 22.6
Sample B Female 18.2
Sample C Male 30.6
Sample D Male 25.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.5
Samples: 4

Max nTPM: 19.3
Min nTPM: 14.9
Sample A Male 16.6
Sample B Male 14.9
Sample C Female 19.3
Sample D Female 15.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
71920479 Antisense, RP_050915_02_A02, Mouse strain C57BL/6J (56 days, male) 0.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org