MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.4 nTPM
HPA Brain:22.4 nTPM
GTEx:36.4 nTPM
FANTOM5:27.8 Scaled Tags Per Million
Pig:47.1 nTPM
Mouse:52.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.2
2019 Male, age 18, unknown 26.5
2828 Female, age 72, unknown 23.3
2666 Male, age 74, left hemisphere 22.9
1827 Male, age 72, unknown 22.2
1870 Female, age 42, unknown 20.8
2411 Female, age 72, unknown 19.9
1830 Male, age 51, unknown 18.3
1833 Male, age 53, unknown 16.7
2586 Male, age 75, left hemisphere 15.9
2219 Male, age 76, both hemispheres 15.3
Dorsal raphe nucleus
nTPM: 18.2
2298 Female, age 72, unknown 21.9
2750 Male, age 76, both hemispheres 21.2
2016 Female, age 72, unknown 17.6
1828 Male, age 53, unknown 16.3
2047 Male, age 72, unknown 13.9
Inferior colliculus
nTPM: 20.6
2097 Female, age 72, unknown 24.0
1890 Male, age 53, unknown 20.9
1848 Female, age 42, unknown 19.7
2849 Male, age 72, unknown 17.9
Median raphe nucleus
nTPM: 17.8
2220 Male, age 76, midline 17.8
Periaquaductal grey, anterior
nTPM: 21.1
2502 Female, age 75, unknown 23.2
1795 Male, age 51, unknown 22.5
1947 Male, age 18, unknown 17.6
Periaquaductal grey, dorsal
nTPM: 18.1
2850 Male, age 76, both hemispheres 20.0
1831 Male, age 72, unknown 18.4
2464 Female, age 72, unknown 17.3
1840 Male, age 53, unknown 16.6
Periaquaductal grey, lateral
nTPM: 19.1
2272 Male, age 74, both hemispheres 20.7
2140 Male, age 76, both hemispheres 19.6
2053 Male, age 18, unknown 17.0
Pretectal area
nTPM: 22.4
2007 Male, age 72, unknown 30.3
1815 Male, age 53, unknown 25.5
1816 Male, age 51, unknown 25.2
1817 Female, age 42, unknown 24.9
1944 Female, age 72, unknown 24.4
2273 Male, age 74, both hemispheres 21.6
2667 Female, age 75, unknown 21.3
2316 Male, age 76, right hemisphere 20.3
2224 Female, age 72, unknown 18.8
2407 Male, age 75, both hemispheres 17.3
2825 Male, age 18, unknown 17.3
Red nucleus
nTPM: 20.8
2785 Male, age 18, unknown 27.6
2227 Male, age 72, unknown 22.1
1865 Male, age 51, unknown 21.4
1954 Female, age 42, unknown 20.7
2725 Female, age 75, unknown 20.5
2769 Male, age 72, unknown 20.5
1904 Male, age 53, unknown 20.0
2823 Male, age 76, right hemisphere 20.0
2503 Female, age 72, unknown 19.7
2584 Male, age 75, left hemisphere 19.6
1821 Female, age 72, unknown 19.0
2588 Male, age 74, left hemisphere 18.8
Substantia nigra
nTPM: 17.4
2665 Male, age 74, both hemispheres 21.5
1889 Female, age 72, unknown 21.0
1941 Male, age 53, unknown 19.0
2590 Female, age 75, unknown 18.8
2409 Female, age 72, unknown 18.4
1851 Male, age 51, unknown 17.7
2583 Male, age 75, right hemisphere 16.8
1916 Female, age 42, unknown 14.7
2699 Male, age 18, unknown 13.6
2241 Male, age 72, unknown 12.8
Superior colliculus
nTPM: 20.6
2261 Male, age 18, unknown 24.4
1995 Male, age 72, unknown 24.2
1796 Male, age 53, unknown 23.4
2087 Female, age 72, unknown 23.0
1913 Female, age 42, unknown 22.5
2587 Male, age 74, left hemisphere 19.8
1895 Male, age 76, right hemisphere 19.3
2668 Female, age 75, unknown 17.6
1839 Male, age 51, unknown 17.4
2664 Male, age 75, both hemispheres 14.2
Ventral tegmental area
nTPM: 18.5
2410 Female, age 72, unknown 21.5
2223 Female, age 72, unknown 19.4
2021 Male, age 53, unknown 18.1
1942 Male, age 51, unknown 18.0
1915 Female, age 42, unknown 17.1
2218 Male, age 76, both hemispheres 16.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.4
Samples: 139

Max nTPM: 97.0
Min nTPM: 19.9
Std nTPM: 13.0
Median nTPM: 34.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 97.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 89.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 84.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 70.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 62.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 62.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 62.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 59.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 59.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 57.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 55.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.8
FF:10158-103A5 76 years, female 27.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.3
Samples: 4

Max nTPM: 41.4
Min nTPM: 35.1
Sample A Female 41.4
Sample B Female 35.1
Sample C Male 36.6
Sample D Male 40.1
Midbrain
nTPM: 40.5
Samples: 4

Max nTPM: 55.8
Min nTPM: 32.2
Sample A Female 55.8
Sample B Female 38.5
Sample C Male 35.6
Sample D Male 32.2
Periaqueductal gray
nTPM: 35.5
Samples: 3

Max nTPM: 36.9
Min nTPM: 33.9
Sample B Female 35.7
Sample C Male 36.9
Sample D Male 33.9
Superior colliculi
nTPM: 47.2
Samples: 4

Max nTPM: 62.1
Min nTPM: 37.2
Sample A Female 45.4
Sample B Female 62.1
Sample C Male 43.9
Sample D Male 37.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 52.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 52.3
Samples: 4

Max nTPM: 65.4
Min nTPM: 44.5
Sample A Male 65.4
Sample B Male 50.0
Sample C Female 44.5
Sample D Female 49.3

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