MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.7 nTPM
HPA Brain:52.3 nTPM
GTEx:47.7 nTPM
FANTOM5:38.9 Scaled Tags Per Million
Pig:80.9 nTPM
Mouse:22.1 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.5
2828 Female, age 72, unknown 53.7
1870 Female, age 42, unknown 53.3
2411 Female, age 72, unknown 52.9
2586 Male, age 75, left hemisphere 50.0
1833 Male, age 53, unknown 49.4
2019 Male, age 18, unknown 47.5
1827 Male, age 72, unknown 46.9
1830 Male, age 51, unknown 45.5
2666 Male, age 74, left hemisphere 43.9
2219 Male, age 76, both hemispheres 42.2
Dorsal raphe nucleus
nTPM: 50.3
2298 Female, age 72, unknown 55.4
2750 Male, age 76, both hemispheres 55.2
2047 Male, age 72, unknown 47.2
1828 Male, age 53, unknown 46.9
2016 Female, age 72, unknown 46.9
Inferior colliculus
nTPM: 42.2
1890 Male, age 53, unknown 43.6
2849 Male, age 72, unknown 42.7
1848 Female, age 42, unknown 41.6
2097 Female, age 72, unknown 41.1
Median raphe nucleus
nTPM: 47.8
2220 Male, age 76, midline 47.8
Periaquaductal grey, anterior
nTPM: 46.3
1795 Male, age 51, unknown 46.6
2502 Female, age 75, unknown 46.6
1947 Male, age 18, unknown 45.7
Periaquaductal grey, dorsal
nTPM: 40.7
2850 Male, age 76, both hemispheres 46.1
2464 Female, age 72, unknown 39.9
1840 Male, age 53, unknown 38.8
1831 Male, age 72, unknown 38.0
Periaquaductal grey, lateral
nTPM: 44.6
2272 Male, age 74, both hemispheres 48.6
2140 Male, age 76, both hemispheres 45.2
2053 Male, age 18, unknown 40.1
Pretectal area
nTPM: 45.8
2667 Female, age 75, unknown 51.8
1817 Female, age 42, unknown 48.3
2273 Male, age 74, both hemispheres 48.3
1815 Male, age 53, unknown 47.7
2007 Male, age 72, unknown 47.7
2316 Male, age 76, right hemisphere 45.2
2224 Female, age 72, unknown 44.6
2825 Male, age 18, unknown 44.6
1816 Male, age 51, unknown 43.5
1944 Female, age 72, unknown 41.5
2407 Male, age 75, both hemispheres 40.7
Red nucleus
nTPM: 52.3
2769 Male, age 72, unknown 57.8
2227 Male, age 72, unknown 56.8
1865 Male, age 51, unknown 56.2
1821 Female, age 72, unknown 55.9
1904 Male, age 53, unknown 55.5
2503 Female, age 72, unknown 55.3
2785 Male, age 18, unknown 53.7
2823 Male, age 76, right hemisphere 50.4
1954 Female, age 42, unknown 50.2
2725 Female, age 75, unknown 50.0
2588 Male, age 74, left hemisphere 45.3
2584 Male, age 75, left hemisphere 40.7
Substantia nigra
nTPM: 45.8
1851 Male, age 51, unknown 53.2
1916 Female, age 42, unknown 52.9
2699 Male, age 18, unknown 51.1
2583 Male, age 75, right hemisphere 47.6
1889 Female, age 72, unknown 45.1
2665 Male, age 74, both hemispheres 44.9
1941 Male, age 53, unknown 43.6
2409 Female, age 72, unknown 42.2
2590 Female, age 75, unknown 41.7
2241 Male, age 72, unknown 35.8
Superior colliculus
nTPM: 46.2
1995 Male, age 72, unknown 53.3
1913 Female, age 42, unknown 52.2
1796 Male, age 53, unknown 50.0
2587 Male, age 74, left hemisphere 49.2
2261 Male, age 18, unknown 46.5
2668 Female, age 75, unknown 45.7
1839 Male, age 51, unknown 43.9
2664 Male, age 75, both hemispheres 42.0
2087 Female, age 72, unknown 39.9
1895 Male, age 76, right hemisphere 39.0
Ventral tegmental area
nTPM: 47.3
1915 Female, age 42, unknown 50.4
2410 Female, age 72, unknown 50.1
2223 Female, age 72, unknown 49.6
2218 Male, age 76, both hemispheres 46.9
1942 Male, age 51, unknown 43.6
2021 Male, age 53, unknown 43.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.7
Samples: 139

Max nTPM: 101.1
Min nTPM: 23.4
Std nTPM: 10.5
Median nTPM: 46.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 101.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 89.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 81.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 72.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 70.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 70.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 68.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 65.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 63.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 61.1
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 60.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.9
FF:10158-103A5 76 years, female 38.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 80.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 77.3
Samples: 4

Max nTPM: 86.9
Min nTPM: 67.0
Sample A Female 86.9
Sample B Female 67.0
Sample C Male 75.2
Sample D Male 79.9
Midbrain
nTPM: 80.9
Samples: 4

Max nTPM: 122.8
Min nTPM: 61.7
Sample A Female 122.8
Sample B Female 73.3
Sample C Male 61.7
Sample D Male 65.6
Periaqueductal gray
nTPM: 68.1
Samples: 3

Max nTPM: 74.8
Min nTPM: 62.3
Sample B Female 67.1
Sample C Male 74.8
Sample D Male 62.3
Superior colliculi
nTPM: 74.9
Samples: 4

Max nTPM: 87.4
Min nTPM: 70.2
Sample A Female 87.4
Sample B Female 71.0
Sample C Male 71.1
Sample D Male 70.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.1
Samples: 4

Max nTPM: 24.4
Min nTPM: 20.3
Sample A Male 24.4
Sample B Male 20.3
Sample C Female 20.9
Sample D Female 22.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
392929 Antisense, RP_040804_01_H11, Mouse strain C57BL/6J (56 days, male) 0.4

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