MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:164.9 nTPM
HPA Brain:215.7 nTPM
GTEx:164.9 nTPM
FANTOM5:223.5 Scaled Tags Per Million
Pig:121.6 nTPM
Mouse:382.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 215.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 192.6
2586 Male, age 75, left hemisphere 285.4
2828 Female, age 72, unknown 230.1
2666 Male, age 74, left hemisphere 209.6
1827 Male, age 72, unknown 201.8
1833 Male, age 53, unknown 184.2
1870 Female, age 42, unknown 182.1
2411 Female, age 72, unknown 181.2
1830 Male, age 51, unknown 169.9
2219 Male, age 76, both hemispheres 165.1
2019 Male, age 18, unknown 116.8
Dorsal raphe nucleus
nTPM: 191.8
2047 Male, age 72, unknown 207.8
2016 Female, age 72, unknown 205.6
2298 Female, age 72, unknown 200.9
1828 Male, age 53, unknown 182.8
2750 Male, age 76, both hemispheres 161.7
Inferior colliculus
nTPM: 181.0
2849 Male, age 72, unknown 217.1
1848 Female, age 42, unknown 176.6
1890 Male, age 53, unknown 166.7
2097 Female, age 72, unknown 163.6
Median raphe nucleus
nTPM: 164.7
2220 Male, age 76, midline 164.7
Periaquaductal grey, anterior
nTPM: 215.7
1795 Male, age 51, unknown 225.1
1947 Male, age 18, unknown 218.9
2502 Female, age 75, unknown 203.2
Periaquaductal grey, dorsal
nTPM: 196.4
1840 Male, age 53, unknown 233.9
1831 Male, age 72, unknown 191.7
2850 Male, age 76, both hemispheres 180.0
2464 Female, age 72, unknown 179.9
Periaquaductal grey, lateral
nTPM: 179.8
2053 Male, age 18, unknown 212.6
2140 Male, age 76, both hemispheres 177.4
2272 Male, age 74, both hemispheres 149.4
Pretectal area
nTPM: 177.3
2825 Male, age 18, unknown 238.2
2407 Male, age 75, both hemispheres 218.8
2667 Female, age 75, unknown 197.9
2224 Female, age 72, unknown 188.1
2273 Male, age 74, both hemispheres 173.1
2316 Male, age 76, right hemisphere 168.7
1816 Male, age 51, unknown 164.8
1944 Female, age 72, unknown 159.5
1815 Male, age 53, unknown 158.4
1817 Female, age 42, unknown 147.6
2007 Male, age 72, unknown 135.1
Red nucleus
nTPM: 157.0
2584 Male, age 75, left hemisphere 183.3
2503 Female, age 72, unknown 176.2
2588 Male, age 74, left hemisphere 175.4
2725 Female, age 75, unknown 173.3
2769 Male, age 72, unknown 164.0
2227 Male, age 72, unknown 163.7
1821 Female, age 72, unknown 154.6
1904 Male, age 53, unknown 148.2
1954 Female, age 42, unknown 141.0
1865 Male, age 51, unknown 139.1
2823 Male, age 76, right hemisphere 134.0
2785 Male, age 18, unknown 130.9
Substantia nigra
nTPM: 179.3
2699 Male, age 18, unknown 218.4
2583 Male, age 75, right hemisphere 208.7
1851 Male, age 51, unknown 198.1
2665 Male, age 74, both hemispheres 194.0
1916 Female, age 42, unknown 183.2
2590 Female, age 75, unknown 170.5
1941 Male, age 53, unknown 158.6
2241 Male, age 72, unknown 157.1
1889 Female, age 72, unknown 154.6
2409 Female, age 72, unknown 150.2
Superior colliculus
nTPM: 194.2
2664 Male, age 75, both hemispheres 323.4
1796 Male, age 53, unknown 216.1
1839 Male, age 51, unknown 197.2
1913 Female, age 42, unknown 183.3
1995 Male, age 72, unknown 182.3
2261 Male, age 18, unknown 179.5
2587 Male, age 74, left hemisphere 175.4
2668 Female, age 75, unknown 167.4
2087 Female, age 72, unknown 162.1
1895 Male, age 76, right hemisphere 155.5
Ventral tegmental area
nTPM: 187.8
2223 Female, age 72, unknown 208.3
2021 Male, age 53, unknown 204.5
1942 Male, age 51, unknown 203.0
1915 Female, age 42, unknown 200.3
2410 Female, age 72, unknown 171.1
2218 Male, age 76, both hemispheres 139.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 164.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 164.9
Samples: 139

Max nTPM: 389.3
Min nTPM: 80.0
Std nTPM: 49.3
Median nTPM: 156.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 389.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 359.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 344.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 302.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 289.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 266.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 256.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 249.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 247.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 242.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 235.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 223.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 223.5
FF:10158-103A5 76 years, female 223.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 121.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 116.2
Samples: 4

Max nTPM: 122.7
Min nTPM: 103.4
Sample A Female 121.5
Sample B Female 103.4
Sample C Male 122.7
Sample D Male 117.0
Midbrain
nTPM: 117.1
Samples: 4

Max nTPM: 148.8
Min nTPM: 85.7
Sample A Female 148.8
Sample B Female 116.7
Sample C Male 85.7
Sample D Male 117.2
Periaqueductal gray
nTPM: 121.7
Samples: 3

Max nTPM: 127.2
Min nTPM: 113.9
Sample B Female 123.9
Sample C Male 127.2
Sample D Male 113.9
Superior colliculi
nTPM: 98.8
Samples: 4

Max nTPM: 120.2
Min nTPM: 78.5
Sample A Female 120.2
Sample B Female 78.5
Sample C Male 80.6
Sample D Male 115.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 382.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 382.2
Samples: 4

Max nTPM: 391.2
Min nTPM: 370.0
Sample A Male 391.2
Sample B Male 384.0
Sample C Female 370.0
Sample D Female 383.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
79904620 Antisense, RP_071218_03_E05, Mouse strain C57BL/6J (56 days, male) 0.2
79912542 Antisense, RP_071218_03_E05, Mouse strain C57BL/6J (56 days, male) 0.2

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