MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.5 nTPM
HPA Brain:13.0 nTPM
GTEx:35.5 nTPM
FANTOM5:46.2 Scaled Tags Per Million
Pig:93.1 nTPM
Mouse:134.3 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.5
2666 Male, age 74, left hemisphere 12.3
1870 Female, age 42, unknown 11.5
2019 Male, age 18, unknown 11.4
2219 Male, age 76, both hemispheres 10.9
1827 Male, age 72, unknown 10.8
1830 Male, age 51, unknown 10.2
2828 Female, age 72, unknown 10.2
1833 Male, age 53, unknown 9.8
2586 Male, age 75, left hemisphere 9.8
2411 Female, age 72, unknown 8.1
Dorsal raphe nucleus
nTPM: 11.4
2298 Female, age 72, unknown 13.8
1828 Male, age 53, unknown 11.8
2016 Female, age 72, unknown 11.4
2750 Male, age 76, both hemispheres 10.9
2047 Male, age 72, unknown 9.2
Inferior colliculus
nTPM: 10.8
2849 Male, age 72, unknown 12.3
1848 Female, age 42, unknown 10.9
2097 Female, age 72, unknown 10.1
1890 Male, age 53, unknown 9.8
Median raphe nucleus
nTPM: 13.0
2220 Male, age 76, midline 13.0
Periaquaductal grey, anterior
nTPM: 10.7
1947 Male, age 18, unknown 11.1
1795 Male, age 51, unknown 10.7
2502 Female, age 75, unknown 10.3
Periaquaductal grey, dorsal
nTPM: 11.0
1840 Male, age 53, unknown 12.6
2850 Male, age 76, both hemispheres 12.5
1831 Male, age 72, unknown 10.1
2464 Female, age 72, unknown 8.6
Periaquaductal grey, lateral
nTPM: 10.0
2140 Male, age 76, both hemispheres 11.0
2053 Male, age 18, unknown 9.5
2272 Male, age 74, both hemispheres 9.4
Pretectal area
nTPM: 11.6
1816 Male, age 51, unknown 13.9
1817 Female, age 42, unknown 13.2
2667 Female, age 75, unknown 13.0
2007 Male, age 72, unknown 12.5
1944 Female, age 72, unknown 12.2
2825 Male, age 18, unknown 11.3
2273 Male, age 74, both hemispheres 11.2
1815 Male, age 53, unknown 11.1
2224 Female, age 72, unknown 11.1
2316 Male, age 76, right hemisphere 9.9
2407 Male, age 75, both hemispheres 8.2
Red nucleus
nTPM: 11.1
1821 Female, age 72, unknown 14.6
2725 Female, age 75, unknown 12.8
2584 Male, age 75, left hemisphere 11.9
2823 Male, age 76, right hemisphere 11.7
1904 Male, age 53, unknown 11.3
2227 Male, age 72, unknown 11.2
2503 Female, age 72, unknown 11.2
2769 Male, age 72, unknown 10.7
1954 Female, age 42, unknown 10.5
2785 Male, age 18, unknown 9.9
2588 Male, age 74, left hemisphere 9.4
1865 Male, age 51, unknown 8.7
Substantia nigra
nTPM: 12.6
1916 Female, age 42, unknown 15.6
1889 Female, age 72, unknown 14.3
1851 Male, age 51, unknown 13.6
2409 Female, age 72, unknown 13.6
2241 Male, age 72, unknown 13.3
2699 Male, age 18, unknown 12.4
1941 Male, age 53, unknown 11.9
2665 Male, age 74, both hemispheres 11.0
2590 Female, age 75, unknown 10.1
2583 Male, age 75, right hemisphere 9.8
Superior colliculus
nTPM: 10.1
1895 Male, age 76, right hemisphere 11.6
2087 Female, age 72, unknown 10.8
1796 Male, age 53, unknown 10.6
1913 Female, age 42, unknown 10.6
2261 Male, age 18, unknown 10.5
1995 Male, age 72, unknown 9.8
2668 Female, age 75, unknown 9.8
1839 Male, age 51, unknown 9.5
2587 Male, age 74, left hemisphere 9.5
2664 Male, age 75, both hemispheres 7.9
Ventral tegmental area
nTPM: 11.1
2218 Male, age 76, both hemispheres 12.6
1915 Female, age 42, unknown 12.1
1942 Male, age 51, unknown 11.4
2021 Male, age 53, unknown 10.5
2223 Female, age 72, unknown 10.5
2410 Female, age 72, unknown 9.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.5
Samples: 139

Max nTPM: 59.8
Min nTPM: 17.5
Std nTPM: 8.7
Median nTPM: 34.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 59.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 59.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 58.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 58.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 58.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 56.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 55.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 53.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 49.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 49.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 48.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.2
FF:10158-103A5 76 years, female 46.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 93.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 90.6
Samples: 4

Max nTPM: 105.8
Min nTPM: 75.7
Sample A Female 105.8
Sample B Female 75.7
Sample C Male 99.8
Sample D Male 81.0
Midbrain
nTPM: 93.1
Samples: 4

Max nTPM: 110.9
Min nTPM: 85.0
Sample A Female 110.9
Sample B Female 88.7
Sample C Male 87.7
Sample D Male 85.0
Periaqueductal gray
nTPM: 81.7
Samples: 3

Max nTPM: 88.9
Min nTPM: 77.5
Sample B Female 77.5
Sample C Male 88.9
Sample D Male 78.7
Superior colliculi
nTPM: 89.6
Samples: 4

Max nTPM: 101.2
Min nTPM: 71.8
Sample A Female 101.2
Sample B Female 71.8
Sample C Male 93.6
Sample D Male 91.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 134.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 134.3
Samples: 4

Max nTPM: 136.6
Min nTPM: 133.3
Sample A Male 133.4
Sample B Male 134.0
Sample C Female 136.6
Sample D Female 133.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
81600136 Antisense, RP_080312_02_H11, Mouse strain C57BL/6J (56 days, male) 8.0
69626985 Antisense, RP_050428_01_F08, Mouse strain C57BL/6J (56 days, male) 5.9

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