HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:72.6 nTPM
HPA Brain:30.2 nTPM
GTEx:72.6 nTPM
FANTOM5:27.5 Scaled Tags Per Million
Pig:10.8 nTPM
Mouse:9.8 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA058400
Glial cells Low
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 30.2
Sample id Sample description nTPM
Hippocampus
nTPM: 28.0
1898 Male, age 80, left hemisphere 31.4
2529 Female, age 94, left hemisphere 31.4
1855 Male, age 76, left hemisphere 28.6
2148 Female, age 91, left hemisphere 27.0
1911 Female, age 85, right hemisphere 25.3
2621 Female, age 67, right hemisphere 24.1
Dentate gyrus
nTPM: 30.1
2530 Female, age 94, left hemisphere 37.9
2010 Male, age 76, both hemispheres 33.0
2528 Male, age 74, both hemispheres 28.2
2531 Female, age 67, both hemispheres 27.9
2246 Female, age 85, both hemispheres 27.4
1927 Female, age 91, both hemispheres 26.0
Entorhinal gyrus
nTPM: 27.0
1938 Female, age 85, left hemisphere 32.2
2117 Female, age 91, right hemisphere 31.5
1787 Male, age 76, left hemisphere 28.3
2686 Male, age 75, right hemisphere 28.0
2764 Male, age 80, right hemisphere 24.2
2613 Female, age 94, left hemisphere 17.8
Hippocampus, CA1
nTPM: 27.3
2749 Male, age 80, left hemisphere 30.1
2527 Male, age 74, both hemispheres 27.6
2045 Male, age 76, both hemispheres 27.3
1873 Female, age 85, both hemispheres 27.2
2082 Female, age 91, right hemisphere 24.0
Hippocampus, CA2
nTPM: 30.2
2249 Male, age 74, both hemispheres 33.3
2437 Female, age 94, left hemisphere 32.1
1940 Female, age 85, left hemisphere 31.6
1963 Male, age 80, left hemisphere 31.3
1892 Male, age 76, both hemispheres 28.7
2113 Female, age 91, right hemisphere 23.9
Hippocampus, CA3
nTPM: 27.2
2436 Male, age 74, both hemispheres 32.7
1867 Male, age 76, both hemispheres 31.2
1891 Female, age 85, both hemispheres 28.5
2137 Male, age 80, left hemisphere 28.1
2861 Female, age 67, both hemispheres 21.7
2620 Female, age 94, left hemisphere 21.2
Parahippocampal cortex
nTPM: 25.1
2018 Male, age 76, both hemispheres 31.6
1990 Female, age 91, right hemisphere 31.1
1850 Male, age 80, both hemispheres 27.1
2250 Female, age 67, right hemisphere 26.3
2692 Male, age 74, both hemispheres 25.9
2245 Female, age 91, both hemispheres 24.0
2693 Female, age 94, both hemispheres 22.3
1933 Female, age 85, both hemispheres 22.1
2532 Female, age 72, left hemisphere 21.4
2622 Female, age 67, right hemisphere 19.3
Perirhinal gyrus
nTPM: 26.1
1794 Male, age 80, right hemisphere 27.2
2521 Female, age 94, right hemisphere 27.0
1841 Female, age 85, right hemisphere 26.8
1847 Female, age 91, left hemisphere 26.1
2848 Male, age 76, right hemisphere 23.6
Subiculum
nTPM: 26.6
2042 Male, age 76, both hemispheres 34.4
1901 Male, age 80, both hemispheres 29.8
1977 Female, age 85, both hemispheres 27.2
2729 Female, age 91, right hemisphere 25.2
2619 Male, age 74, both hemispheres 24.2
2438 Female, age 94, left hemisphere 19.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 72.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 72.6
Samples: 197

Max nTPM: 170.2
Min nTPM: 32.6
Std nTPM: 20.0
Median nTPM: 68.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 170.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 150.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 143.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 132.9
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 125.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 114.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 113.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 112.7
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 111.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 110.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 108.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 27.5
FF:10169-103B7 60 years, female 35.3
FF:10153-102I9 76 years, female 19.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 10.8
Pig sample Sample description nTPM
Subiculum
nTPM: 9.4
Samples: 4

Max nTPM: 11.6
Min nTPM: 7.3
Sample A Female 11.6
Sample B Female 9.4
Sample C Male 7.3
Sample D Male 9.2
Dorsal hippocampus
nTPM: 10.8
Samples: 4

Max nTPM: 14.3
Min nTPM: 7.8
Sample A Female 14.3
Sample B Female 9.9
Sample C Male 11.3
Sample D Male 7.8
Entorhinal cortex
nTPM: 10.0
Samples: 4

Max nTPM: 13.9
Min nTPM: 7.3
Sample A Female 9.7
Sample B Female 13.9
Sample C Male 9.0
Sample D Male 7.3
Ventral hippocampus
nTPM: 10.5
Samples: 4

Max nTPM: 12.5
Min nTPM: 9.3
Sample A Female 12.5
Sample B Female 9.3
Sample C Male 9.7
Sample D Male 10.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 9.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 9.8
Samples: 4

Max nTPM: 10.3
Min nTPM: 9.2
Sample A Male 9.2
Sample B Male 9.8
Sample C Female 10.0
Sample D Female 10.3
Hippocampal formation
nTPM: 8.4
Samples: 4

Max nTPM: 11.7
Min nTPM: 5.8
Sample A Male 5.8
Sample B Male 7.5
Sample C Female 11.7
Sample D Female 8.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
75198160 Antisense, RP_060502_02_A11, Mouse strain C57BL/6J (56 days, male) 0.0

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