MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.4 nTPM
HPA Brain:27.2 nTPM
GTEx:37.4 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Pig:37.2 nTPM
Mouse:14.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.5
2586 Male, age 75, left hemisphere 30.2
1827 Male, age 72, unknown 26.9
2828 Female, age 72, unknown 26.8
2411 Female, age 72, unknown 26.4
2019 Male, age 18, unknown 26.3
1833 Male, age 53, unknown 23.5
2666 Male, age 74, left hemisphere 22.8
1870 Female, age 42, unknown 22.4
1830 Male, age 51, unknown 21.7
2219 Male, age 76, both hemispheres 18.0
Dorsal raphe nucleus
nTPM: 22.9
2298 Female, age 72, unknown 27.4
1828 Male, age 53, unknown 23.9
2750 Male, age 76, both hemispheres 23.2
2047 Male, age 72, unknown 20.2
2016 Female, age 72, unknown 19.7
Inferior colliculus
nTPM: 23.2
2097 Female, age 72, unknown 25.8
1890 Male, age 53, unknown 24.6
1848 Female, age 42, unknown 22.3
2849 Male, age 72, unknown 20.1
Median raphe nucleus
nTPM: 23.6
2220 Male, age 76, midline 23.6
Periaquaductal grey, anterior
nTPM: 23.7
2502 Female, age 75, unknown 24.2
1795 Male, age 51, unknown 23.9
1947 Male, age 18, unknown 23.0
Periaquaductal grey, dorsal
nTPM: 21.1
1831 Male, age 72, unknown 23.3
2850 Male, age 76, both hemispheres 21.4
2464 Female, age 72, unknown 20.0
1840 Male, age 53, unknown 19.6
Periaquaductal grey, lateral
nTPM: 20.9
2272 Male, age 74, both hemispheres 22.6
2053 Male, age 18, unknown 21.5
2140 Male, age 76, both hemispheres 18.7
Pretectal area
nTPM: 27.2
1816 Male, age 51, unknown 35.2
2007 Male, age 72, unknown 34.2
1817 Female, age 42, unknown 32.4
1815 Male, age 53, unknown 31.9
2667 Female, age 75, unknown 28.8
1944 Female, age 72, unknown 26.3
2224 Female, age 72, unknown 23.1
2273 Male, age 74, both hemispheres 23.1
2825 Male, age 18, unknown 22.1
2407 Male, age 75, both hemispheres 21.7
2316 Male, age 76, right hemisphere 20.6
Red nucleus
nTPM: 26.5
1821 Female, age 72, unknown 33.2
2785 Male, age 18, unknown 29.6
1904 Male, age 53, unknown 28.9
2823 Male, age 76, right hemisphere 27.2
1865 Male, age 51, unknown 27.1
1954 Female, age 42, unknown 26.9
2769 Male, age 72, unknown 26.8
2503 Female, age 72, unknown 26.3
2227 Male, age 72, unknown 24.4
2588 Male, age 74, left hemisphere 23.7
2725 Female, age 75, unknown 23.5
2584 Male, age 75, left hemisphere 20.8
Substantia nigra
nTPM: 25.4
1916 Female, age 42, unknown 32.2
1889 Female, age 72, unknown 31.9
1851 Male, age 51, unknown 28.4
2583 Male, age 75, right hemisphere 24.9
2665 Male, age 74, both hemispheres 24.3
2590 Female, age 75, unknown 23.3
2409 Female, age 72, unknown 22.9
2699 Male, age 18, unknown 22.9
1941 Male, age 53, unknown 21.9
2241 Male, age 72, unknown 21.6
Superior colliculus
nTPM: 25.8
1796 Male, age 53, unknown 28.3
2668 Female, age 75, unknown 28.3
2261 Male, age 18, unknown 27.9
2587 Male, age 74, left hemisphere 27.1
1913 Female, age 42, unknown 26.6
1995 Male, age 72, unknown 26.0
2664 Male, age 75, both hemispheres 25.9
2087 Female, age 72, unknown 23.9
1895 Male, age 76, right hemisphere 23.1
1839 Male, age 51, unknown 20.5
Ventral tegmental area
nTPM: 24.4
2410 Female, age 72, unknown 28.2
2223 Female, age 72, unknown 27.7
1915 Female, age 42, unknown 26.5
2218 Male, age 76, both hemispheres 23.2
1942 Male, age 51, unknown 21.9
2021 Male, age 53, unknown 19.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.4
Samples: 139

Max nTPM: 63.1
Min nTPM: 19.0
Std nTPM: 6.9
Median nTPM: 36.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 63.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 60.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 56.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 55.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 54.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 52.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 51.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 49.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 48.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 47.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 47.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.2
FF:10158-103A5 76 years, female 29.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.7
Samples: 4

Max nTPM: 38.4
Min nTPM: 28.6
Sample A Female 36.5
Sample B Female 28.6
Sample C Male 38.4
Sample D Male 31.1
Midbrain
nTPM: 36.2
Samples: 4

Max nTPM: 41.2
Min nTPM: 29.8
Sample A Female 41.2
Sample B Female 29.8
Sample C Male 39.8
Sample D Male 33.8
Periaqueductal gray
nTPM: 31.4
Samples: 3

Max nTPM: 35.9
Min nTPM: 27.2
Sample B Female 27.2
Sample C Male 35.9
Sample D Male 31.1
Superior colliculi
nTPM: 37.2
Samples: 4

Max nTPM: 43.3
Min nTPM: 32.5
Sample A Female 37.6
Sample B Female 32.5
Sample C Male 43.3
Sample D Male 35.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.9
Samples: 4

Max nTPM: 17.1
Min nTPM: 12.2
Sample A Male 16.0
Sample B Male 14.3
Sample C Female 12.2
Sample D Female 17.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68269514 Antisense, RP_041129_01_G02, Mouse strain C57BL/6J (56 days, male) 0.0

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