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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
72.4
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 72.4
Samples: 152
Max nTPM: 489.8
Min nTPM: 13.8
Std nTPM: 48.4
Median nTPM: 61.9
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
489.8
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
218.6
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
216.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
192.7
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
161.0
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
155.6
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
151.3
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
135.8
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
133.3
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
132.9
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
132.8
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
120.8
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
118.4
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
118.0
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
110.5
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
108.9
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
107.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
105.4
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
105.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
104.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
102.2
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
102.2
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
102.1
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
102.1
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
101.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
100.2
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
100.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
99.6
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
99.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
96.7
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
95.3
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
93.7
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
93.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
91.6
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
91.0
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
90.1
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
87.5
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
87.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
85.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
84.8
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
83.6
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
83.4
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
82.0
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
81.4
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
80.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
78.3
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
78.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
76.4
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
74.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
74.1
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
74.0
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
71.9
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
71.3
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
70.5
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
70.2
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
70.0
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
69.8
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
69.7
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
68.6
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
68.3
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
68.0
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
67.4
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
67.1
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
66.9
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
66.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
65.1
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
64.9
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
64.4
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
64.1
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
63.8
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
63.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
63.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
63.3
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
63.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
62.2
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
62.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
61.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
61.6
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
61.5
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
60.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
60.3
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
59.6
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
59.2
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
58.9
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
57.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
57.7
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
57.1
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
56.4
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
56.0
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
55.7
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
55.4
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
55.2
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
54.5
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
54.1
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
53.8
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
53.7
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
53.5
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
53.2
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
52.0
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
51.9
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
51.4
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
50.5
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
50.2
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
50.1
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
48.6
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
48.1
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
48.1
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
47.5
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
46.9
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
46.9
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
46.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
46.2
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
45.9
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
45.8
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
45.6
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
45.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
44.3
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
44.3
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
43.8
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
43.7
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
43.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
43.2
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
43.1
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
42.0
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
41.2
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
41.1
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
41.0
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
40.0
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
39.6
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
39.5
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
39.4
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
39.3
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
38.4
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
37.9
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
37.5
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
37.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
35.6
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
35.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
35.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
35.0
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
34.7
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
34.3
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
33.4
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
33.1
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
32.3
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
31.4
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
31.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
29.7
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
29.5
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
24.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
24.3
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
13.8
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
31.1
Mouse sample
Sample description
nTPM
Amygdala nTPM: 31.2
Samples: 4
Max nTPM: 34.6
Min nTPM: 27.3
Sample A
Male
34.6
Sample B
Male
28.4
Sample C
Female
27.3
Sample D
Female
34.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
