MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.9 nTPM
HPA Brain:10.1 nTPM
GTEx:10.9 nTPM
FANTOM5:41.8 Scaled Tags Per Million
Pig:19.2 nTPM
Mouse:36.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 10.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.0
2586 Male, age 75, left hemisphere 11.1
1870 Female, age 42, unknown 10.9
2411 Female, age 72, unknown 9.7
2019 Male, age 18, unknown 9.3
1833 Male, age 53, unknown 9.2
1830 Male, age 51, unknown 9.0
1827 Male, age 72, unknown 8.2
2828 Female, age 72, unknown 8.2
2666 Male, age 74, left hemisphere 7.5
2219 Male, age 76, both hemispheres 7.1
Dorsal raphe nucleus
nTPM: 9.2
2750 Male, age 76, both hemispheres 11.6
2298 Female, age 72, unknown 10.2
2047 Male, age 72, unknown 8.7
2016 Female, age 72, unknown 8.1
1828 Male, age 53, unknown 7.5
Inferior colliculus
nTPM: 8.1
2097 Female, age 72, unknown 9.8
1890 Male, age 53, unknown 8.1
1848 Female, age 42, unknown 7.8
2849 Male, age 72, unknown 6.5
Median raphe nucleus
nTPM: 10.1
2220 Male, age 76, midline 10.1
Periaquaductal grey, anterior
nTPM: 8.7
2502 Female, age 75, unknown 9.8
1947 Male, age 18, unknown 8.6
1795 Male, age 51, unknown 7.7
Periaquaductal grey, dorsal
nTPM: 7.9
2464 Female, age 72, unknown 8.4
2850 Male, age 76, both hemispheres 8.3
1840 Male, age 53, unknown 7.6
1831 Male, age 72, unknown 7.1
Periaquaductal grey, lateral
nTPM: 7.9
2053 Male, age 18, unknown 8.3
2140 Male, age 76, both hemispheres 8.0
2272 Male, age 74, both hemispheres 7.5
Pretectal area
nTPM: 8.7
2007 Male, age 72, unknown 9.8
1815 Male, age 53, unknown 9.7
1944 Female, age 72, unknown 9.6
1816 Male, age 51, unknown 9.1
1817 Female, age 42, unknown 8.8
2273 Male, age 74, both hemispheres 8.7
2224 Female, age 72, unknown 8.5
2667 Female, age 75, unknown 8.2
2316 Male, age 76, right hemisphere 8.1
2407 Male, age 75, both hemispheres 7.9
2825 Male, age 18, unknown 7.4
Red nucleus
nTPM: 8.8
1904 Male, age 53, unknown 10.3
2785 Male, age 18, unknown 9.8
2227 Male, age 72, unknown 9.4
1821 Female, age 72, unknown 9.3
1865 Male, age 51, unknown 9.2
1954 Female, age 42, unknown 9.2
2769 Male, age 72, unknown 9.0
2503 Female, age 72, unknown 8.9
2584 Male, age 75, left hemisphere 8.2
2725 Female, age 75, unknown 7.7
2823 Male, age 76, right hemisphere 7.0
2588 Male, age 74, left hemisphere 6.9
Substantia nigra
nTPM: 8.7
2241 Male, age 72, unknown 10.2
1889 Female, age 72, unknown 9.7
2583 Male, age 75, right hemisphere 9.7
1851 Male, age 51, unknown 9.3
2590 Female, age 75, unknown 9.1
1916 Female, age 42, unknown 8.5
1941 Male, age 53, unknown 8.5
2409 Female, age 72, unknown 8.3
2699 Male, age 18, unknown 7.4
2665 Male, age 74, both hemispheres 6.6
Superior colliculus
nTPM: 8.7
1913 Female, age 42, unknown 10.0
2261 Male, age 18, unknown 9.8
1995 Male, age 72, unknown 9.2
2087 Female, age 72, unknown 8.9
2664 Male, age 75, both hemispheres 8.9
2668 Female, age 75, unknown 8.7
2587 Male, age 74, left hemisphere 8.5
1796 Male, age 53, unknown 8.1
1839 Male, age 51, unknown 8.0
1895 Male, age 76, right hemisphere 7.4
Ventral tegmental area
nTPM: 8.7
2223 Female, age 72, unknown 9.4
1942 Male, age 51, unknown 8.9
2410 Female, age 72, unknown 8.9
2021 Male, age 53, unknown 8.7
1915 Female, age 42, unknown 8.2
2218 Male, age 76, both hemispheres 8.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.9
Samples: 139

Max nTPM: 18.7
Min nTPM: 4.7
Std nTPM: 2.3
Median nTPM: 10.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 18.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 17.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 17.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 16.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 16.5
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 15.5
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 15.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 14.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 14.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 14.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 14.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.8
FF:10158-103A5 76 years, female 41.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.5
Samples: 4

Max nTPM: 20.5
Min nTPM: 16.0
Sample A Female 20.5
Sample B Female 16.3
Sample C Male 17.1
Sample D Male 16.0
Midbrain
nTPM: 19.2
Samples: 4

Max nTPM: 23.0
Min nTPM: 15.4
Sample A Female 23.0
Sample B Female 18.5
Sample C Male 19.9
Sample D Male 15.4
Periaqueductal gray
nTPM: 16.5
Samples: 3

Max nTPM: 18.8
Min nTPM: 14.4
Sample B Female 16.4
Sample C Male 18.8
Sample D Male 14.4
Superior colliculi
nTPM: 16.4
Samples: 4

Max nTPM: 18.3
Min nTPM: 14.8
Sample A Female 18.3
Sample B Female 14.8
Sample C Male 15.4
Sample D Male 16.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.1
Samples: 4

Max nTPM: 37.7
Min nTPM: 34.3
Sample A Male 35.5
Sample B Male 37.7
Sample C Female 36.9
Sample D Female 34.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
686184 Antisense, RP_040914_02_H04, Mouse strain C57BL/6J (56 days, male) 0.1
71210241 Antisense, RP_050810_03_G07, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org