MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.1 nTPM
HPA Brain:24.0 nTPM
GTEx:18.1 nTPM
FANTOM5:23.6 Scaled Tags Per Million
Pig:16.6 nTPM
Mouse:64.5 nTPM
Allen mouse:10.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.3
2666 Male, age 74, left hemisphere 18.0
1827 Male, age 72, unknown 17.4
2411 Female, age 72, unknown 16.9
1870 Female, age 42, unknown 16.6
2828 Female, age 72, unknown 16.6
2019 Male, age 18, unknown 16.4
2219 Male, age 76, both hemispheres 16.0
1833 Male, age 53, unknown 15.5
2586 Male, age 75, left hemisphere 15.0
1830 Male, age 51, unknown 14.3
Dorsal raphe nucleus
nTPM: 22.6
2298 Female, age 72, unknown 28.2
2047 Male, age 72, unknown 25.4
1828 Male, age 53, unknown 20.6
2750 Male, age 76, both hemispheres 19.8
2016 Female, age 72, unknown 19.0
Inferior colliculus
nTPM: 16.1
2097 Female, age 72, unknown 19.4
1848 Female, age 42, unknown 16.1
2849 Male, age 72, unknown 14.7
1890 Male, age 53, unknown 14.3
Median raphe nucleus
nTPM: 24.0
2220 Male, age 76, midline 24.0
Periaquaductal grey, anterior
nTPM: 18.2
1795 Male, age 51, unknown 18.8
2502 Female, age 75, unknown 18.3
1947 Male, age 18, unknown 17.5
Periaquaductal grey, dorsal
nTPM: 17.3
1840 Male, age 53, unknown 19.8
2850 Male, age 76, both hemispheres 16.9
2464 Female, age 72, unknown 16.6
1831 Male, age 72, unknown 15.9
Periaquaductal grey, lateral
nTPM: 16.8
2272 Male, age 74, both hemispheres 17.6
2053 Male, age 18, unknown 17.4
2140 Male, age 76, both hemispheres 15.6
Pretectal area
nTPM: 18.9
2224 Female, age 72, unknown 21.9
1817 Female, age 42, unknown 21.1
1816 Male, age 51, unknown 20.3
1944 Female, age 72, unknown 20.2
2007 Male, age 72, unknown 20.1
1815 Male, age 53, unknown 19.1
2273 Male, age 74, both hemispheres 18.7
2667 Female, age 75, unknown 18.6
2407 Male, age 75, both hemispheres 16.9
2825 Male, age 18, unknown 16.2
2316 Male, age 76, right hemisphere 14.8
Red nucleus
nTPM: 14.4
1821 Female, age 72, unknown 17.3
2725 Female, age 75, unknown 16.2
2785 Male, age 18, unknown 15.7
2588 Male, age 74, left hemisphere 14.7
2503 Female, age 72, unknown 14.1
2584 Male, age 75, left hemisphere 13.9
2769 Male, age 72, unknown 13.9
1904 Male, age 53, unknown 13.8
1954 Female, age 42, unknown 13.8
2227 Male, age 72, unknown 13.6
2823 Male, age 76, right hemisphere 13.2
1865 Male, age 51, unknown 13.1
Substantia nigra
nTPM: 21.2
1916 Female, age 42, unknown 26.0
2241 Male, age 72, unknown 25.8
1851 Male, age 51, unknown 23.2
1941 Male, age 53, unknown 22.2
1889 Female, age 72, unknown 20.8
2409 Female, age 72, unknown 20.8
2665 Male, age 74, both hemispheres 20.0
2699 Male, age 18, unknown 19.8
2590 Female, age 75, unknown 17.5
2583 Male, age 75, right hemisphere 16.1
Superior colliculus
nTPM: 16.5
2087 Female, age 72, unknown 18.9
2261 Male, age 18, unknown 18.5
1796 Male, age 53, unknown 18.0
2668 Female, age 75, unknown 17.7
1895 Male, age 76, right hemisphere 17.0
1839 Male, age 51, unknown 16.2
2587 Male, age 74, left hemisphere 16.2
2664 Male, age 75, both hemispheres 15.7
1913 Female, age 42, unknown 14.0
1995 Male, age 72, unknown 13.2
Ventral tegmental area
nTPM: 19.5
1915 Female, age 42, unknown 23.4
1942 Male, age 51, unknown 19.7
2218 Male, age 76, both hemispheres 19.7
2021 Male, age 53, unknown 19.0
2410 Female, age 72, unknown 18.5
2223 Female, age 72, unknown 16.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.1
Samples: 139

Max nTPM: 37.4
Min nTPM: 10.1
Std nTPM: 4.9
Median nTPM: 17.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 37.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 33.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 30.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 30.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 29.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 29.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 28.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 27.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 27.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 27.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 26.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.6
FF:10158-103A5 76 years, female 23.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.6
Samples: 4

Max nTPM: 22.8
Min nTPM: 7.6
Sample A Female 22.0
Sample B Female 13.9
Sample C Male 22.8
Sample D Male 7.6
Midbrain
nTPM: 12.2
Samples: 4

Max nTPM: 14.3
Min nTPM: 8.8
Sample A Female 12.7
Sample B Female 13.0
Sample C Male 14.3
Sample D Male 8.8
Periaqueductal gray
nTPM: 12.8
Samples: 3

Max nTPM: 14.9
Min nTPM: 11.4
Sample B Female 12.0
Sample C Male 14.9
Sample D Male 11.4
Superior colliculi
nTPM: 11.1
Samples: 4

Max nTPM: 15.4
Min nTPM: 8.3
Sample A Female 9.9
Sample B Female 8.3
Sample C Male 15.4
Sample D Male 10.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 64.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 64.5
Samples: 4

Max nTPM: 68.1
Min nTPM: 61.1
Sample A Male 61.1
Sample B Male 68.1
Sample C Female 67.0
Sample D Female 61.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.2
68445131 Antisense, RP_050111_02_H01, Mouse strain C57BL/6J (56 days, male) 10.2

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