HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.3 nTPM
HPA Brain:86.6 nTPM
GTEx:48.3 nTPM
FANTOM5:39.0 Scaled Tags Per Million
Pig:27.6 nTPM
Mouse:61.2 nTPM
Allen mouse:1.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 86.6
Sample id Sample description nTPM
Hippocampus
nTPM: 80.4
1855 Male, age 76, left hemisphere 88.6
1911 Female, age 85, right hemisphere 81.5
1898 Male, age 80, left hemisphere 80.7
2529 Female, age 94, left hemisphere 79.9
2621 Female, age 67, right hemisphere 76.1
2148 Female, age 91, left hemisphere 75.6
Dentate gyrus
nTPM: 81.8
2010 Male, age 76, both hemispheres 98.2
2246 Female, age 85, both hemispheres 86.9
2528 Male, age 74, both hemispheres 83.0
2530 Female, age 94, left hemisphere 77.3
1927 Female, age 91, both hemispheres 75.6
2531 Female, age 67, both hemispheres 69.5
Entorhinal gyrus
nTPM: 71.0
1787 Male, age 76, left hemisphere 81.6
2117 Female, age 91, right hemisphere 78.9
1938 Female, age 85, left hemisphere 76.0
2686 Male, age 75, right hemisphere 64.9
2764 Male, age 80, right hemisphere 64.3
2613 Female, age 94, left hemisphere 60.7
Hippocampus, CA1
nTPM: 81.6
2045 Male, age 76, both hemispheres 94.3
1873 Female, age 85, both hemispheres 86.5
2527 Male, age 74, both hemispheres 81.2
2082 Female, age 91, right hemisphere 73.9
2749 Male, age 80, left hemisphere 72.4
Hippocampus, CA2
nTPM: 77.0
1940 Female, age 85, left hemisphere 87.8
2113 Female, age 91, right hemisphere 80.9
2249 Male, age 74, both hemispheres 79.1
2437 Female, age 94, left hemisphere 73.4
1892 Male, age 76, both hemispheres 71.6
1963 Male, age 80, left hemisphere 69.1
Hippocampus, CA3
nTPM: 77.5
2436 Male, age 74, both hemispheres 89.6
1891 Female, age 85, both hemispheres 84.0
1867 Male, age 76, both hemispheres 81.7
2137 Male, age 80, left hemisphere 73.0
2620 Female, age 94, left hemisphere 68.4
2861 Female, age 67, both hemispheres 68.3
Parahippocampal cortex
nTPM: 76.6
2018 Male, age 76, both hemispheres 101.1
1933 Female, age 85, both hemispheres 84.5
1850 Male, age 80, both hemispheres 75.9
2692 Male, age 74, both hemispheres 74.3
2250 Female, age 67, right hemisphere 74.1
2693 Female, age 94, both hemispheres 73.8
2532 Female, age 72, left hemisphere 73.4
2245 Female, age 91, both hemispheres 72.7
1990 Female, age 91, right hemisphere 72.3
2622 Female, age 67, right hemisphere 63.6
Perirhinal gyrus
nTPM: 74.0
2848 Male, age 76, right hemisphere 79.3
1841 Female, age 85, right hemisphere 76.7
2521 Female, age 94, right hemisphere 76.1
1847 Female, age 91, left hemisphere 70.3
1794 Male, age 80, right hemisphere 67.5
Subiculum
nTPM: 86.6
2042 Male, age 76, both hemispheres 108.0
2438 Female, age 94, left hemisphere 99.5
2729 Female, age 91, right hemisphere 83.3
1901 Male, age 80, both hemispheres 79.3
2619 Male, age 74, both hemispheres 76.1
1977 Female, age 85, both hemispheres 73.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 48.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 48.3
Samples: 197

Max nTPM: 91.4
Min nTPM: 24.5
Std nTPM: 11.7
Median nTPM: 45.9
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 91.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 90.5
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 89.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 83.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 79.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 79.6
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 78.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 75.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 72.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 69.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 69.1
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 39.0
FF:10169-103B7 60 years, female 46.7
FF:10153-102I9 76 years, female 31.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 27.6
Pig sample Sample description nTPM
Subiculum
nTPM: 26.4
Samples: 4

Max nTPM: 29.4
Min nTPM: 23.5
Sample A Female 27.9
Sample B Female 24.9
Sample C Male 23.5
Sample D Male 29.4
Dorsal hippocampus
nTPM: 27.6
Samples: 4

Max nTPM: 32.2
Min nTPM: 23.5
Sample A Female 32.2
Sample B Female 28.1
Sample C Male 26.4
Sample D Male 23.5
Entorhinal cortex
nTPM: 24.4
Samples: 4

Max nTPM: 26.4
Min nTPM: 21.7
Sample A Female 24.1
Sample B Female 25.5
Sample C Male 26.4
Sample D Male 21.7
Ventral hippocampus
nTPM: 25.7
Samples: 4

Max nTPM: 31.4
Min nTPM: 23.0
Sample A Female 31.4
Sample B Female 24.2
Sample C Male 23.0
Sample D Male 24.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 61.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 61.2
Samples: 4

Max nTPM: 66.5
Min nTPM: 55.5
Sample A Male 55.5
Sample B Male 66.5
Sample C Female 63.8
Sample D Female 59.1
Hippocampal formation
nTPM: 61.1
Samples: 4

Max nTPM: 69.3
Min nTPM: 56.3
Sample A Male 69.3
Sample B Male 58.7
Sample C Female 60.0
Sample D Female 56.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.0
74819347 Antisense, RP_060315_02_F02, Mouse strain C57BL/6J (56 days, male) 1.1
68845586 Antisense, RP_050224_02_B02, Mouse strain C57BL/6J (56 days, male) 0.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org