MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.9 nTPM
HPA Brain:29.9 nTPM
GTEx:23.9 nTPM
FANTOM5:50.5 Scaled Tags Per Million
Pig:16.6 nTPM
Mouse:27.2 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.2
2219 Male, age 76, both hemispheres 32.7
2586 Male, age 75, left hemisphere 32.7
2411 Female, age 72, unknown 28.5
1833 Male, age 53, unknown 27.7
2828 Female, age 72, unknown 27.5
1827 Male, age 72, unknown 25.4
2666 Male, age 74, left hemisphere 24.9
1870 Female, age 42, unknown 24.6
2019 Male, age 18, unknown 24.2
1830 Male, age 51, unknown 23.6
Dorsal raphe nucleus
nTPM: 25.3
2750 Male, age 76, both hemispheres 29.9
2047 Male, age 72, unknown 25.5
2016 Female, age 72, unknown 24.9
2298 Female, age 72, unknown 23.6
1828 Male, age 53, unknown 22.7
Inferior colliculus
nTPM: 23.2
2849 Male, age 72, unknown 25.3
1848 Female, age 42, unknown 22.6
2097 Female, age 72, unknown 22.6
1890 Male, age 53, unknown 22.1
Median raphe nucleus
nTPM: 29.9
2220 Male, age 76, midline 29.9
Periaquaductal grey, anterior
nTPM: 28.9
2502 Female, age 75, unknown 31.7
1795 Male, age 51, unknown 28.7
1947 Male, age 18, unknown 26.2
Periaquaductal grey, dorsal
nTPM: 21.4
2850 Male, age 76, both hemispheres 24.2
2464 Female, age 72, unknown 21.8
1831 Male, age 72, unknown 21.6
1840 Male, age 53, unknown 17.7
Periaquaductal grey, lateral
nTPM: 25.6
2272 Male, age 74, both hemispheres 27.0
2140 Male, age 76, both hemispheres 26.3
2053 Male, age 18, unknown 23.6
Pretectal area
nTPM: 25.1
2407 Male, age 75, both hemispheres 29.6
2007 Male, age 72, unknown 28.3
2667 Female, age 75, unknown 28.3
2825 Male, age 18, unknown 26.4
1816 Male, age 51, unknown 25.1
1815 Male, age 53, unknown 24.1
2224 Female, age 72, unknown 23.7
1817 Female, age 42, unknown 23.4
2316 Male, age 76, right hemisphere 23.2
2273 Male, age 74, both hemispheres 22.3
1944 Female, age 72, unknown 21.5
Red nucleus
nTPM: 26.1
2769 Male, age 72, unknown 29.8
2785 Male, age 18, unknown 28.4
1904 Male, age 53, unknown 28.2
2823 Male, age 76, right hemisphere 27.0
2503 Female, age 72, unknown 26.4
2588 Male, age 74, left hemisphere 26.0
2584 Male, age 75, left hemisphere 25.9
2725 Female, age 75, unknown 25.9
2227 Male, age 72, unknown 25.5
1865 Male, age 51, unknown 24.6
1954 Female, age 42, unknown 23.1
1821 Female, age 72, unknown 22.4
Substantia nigra
nTPM: 23.0
1941 Male, age 53, unknown 27.0
1851 Male, age 51, unknown 26.8
2665 Male, age 74, both hemispheres 25.9
2699 Male, age 18, unknown 25.6
1916 Female, age 42, unknown 25.3
2583 Male, age 75, right hemisphere 23.2
2590 Female, age 75, unknown 21.2
1889 Female, age 72, unknown 20.9
2409 Female, age 72, unknown 17.3
2241 Male, age 72, unknown 17.1
Superior colliculus
nTPM: 25.6
2664 Male, age 75, both hemispheres 31.7
1839 Male, age 51, unknown 28.3
2087 Female, age 72, unknown 27.4
2261 Male, age 18, unknown 26.1
1796 Male, age 53, unknown 26.0
1913 Female, age 42, unknown 25.5
1995 Male, age 72, unknown 25.1
1895 Male, age 76, right hemisphere 22.2
2668 Female, age 75, unknown 22.0
2587 Male, age 74, left hemisphere 21.9
Ventral tegmental area
nTPM: 27.2
2218 Male, age 76, both hemispheres 29.9
2021 Male, age 53, unknown 28.8
2223 Female, age 72, unknown 28.1
2410 Female, age 72, unknown 27.0
1942 Male, age 51, unknown 25.1
1915 Female, age 42, unknown 24.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.9
Samples: 139

Max nTPM: 48.5
Min nTPM: 9.4
Std nTPM: 6.0
Median nTPM: 24.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 48.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 37.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 37.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 36.9
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 36.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 35.1
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 33.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 33.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 33.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 31.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 31.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.5
FF:10158-103A5 76 years, female 50.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.4
Samples: 4

Max nTPM: 18.2
Min nTPM: 13.3
Sample A Female 16.7
Sample B Female 13.3
Sample C Male 17.4
Sample D Male 18.2
Midbrain
nTPM: 16.6
Samples: 4

Max nTPM: 18.4
Min nTPM: 13.8
Sample A Female 18.4
Sample B Female 13.8
Sample C Male 17.5
Sample D Male 16.6
Periaqueductal gray
nTPM: 14.2
Samples: 3

Max nTPM: 15.6
Min nTPM: 12.4
Sample B Female 12.4
Sample C Male 15.6
Sample D Male 14.5
Superior colliculi
nTPM: 15.3
Samples: 4

Max nTPM: 16.9
Min nTPM: 13.7
Sample A Female 15.0
Sample B Female 13.7
Sample C Male 15.5
Sample D Male 16.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.2
Samples: 4

Max nTPM: 28.5
Min nTPM: 25.9
Sample A Male 28.5
Sample B Male 27.1
Sample C Female 27.1
Sample D Female 25.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
71021168 Antisense, RP_050526_04_B11, Mouse strain C57BL/6J (56 days, male) 1.6
76081928 Antisense, RP_060626_01_A08, Mouse strain C57BL/6J (56 days, male) 1.0
112644308 Antisense, RP_110421_01_B04, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org