HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:35.1 nTPM
HPA Brain:90.3 nTPM
GTEx:35.1 nTPM
FANTOM5:145.6 Scaled Tags Per Million
Pig:31.0 nTPM
Mouse:26.2 nTPM
Allen mouse:4.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA021046
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 90.3
Sample id Sample description nTPM
Hippocampus
nTPM: 84.1
1855 Male, age 76, left hemisphere 91.9
2148 Female, age 91, left hemisphere 89.0
2529 Female, age 94, left hemisphere 88.1
2621 Female, age 67, right hemisphere 81.4
1898 Male, age 80, left hemisphere 81.1
1911 Female, age 85, right hemisphere 73.3
Dentate gyrus
nTPM: 84.5
2528 Male, age 74, both hemispheres 88.2
2246 Female, age 85, both hemispheres 88.1
1927 Female, age 91, both hemispheres 87.3
2531 Female, age 67, both hemispheres 85.8
2010 Male, age 76, both hemispheres 84.2
2530 Female, age 94, left hemisphere 73.2
Entorhinal gyrus
nTPM: 84.6
2764 Male, age 80, right hemisphere 95.4
2686 Male, age 75, right hemisphere 86.3
1938 Female, age 85, left hemisphere 85.7
2613 Female, age 94, left hemisphere 84.2
1787 Male, age 76, left hemisphere 81.9
2117 Female, age 91, right hemisphere 74.3
Hippocampus, CA1
nTPM: 90.3
2749 Male, age 80, left hemisphere 99.3
1873 Female, age 85, both hemispheres 91.3
2045 Male, age 76, both hemispheres 88.1
2082 Female, age 91, right hemisphere 87.0
2527 Male, age 74, both hemispheres 85.8
Hippocampus, CA2
nTPM: 86.4
1963 Male, age 80, left hemisphere 101.9
1940 Female, age 85, left hemisphere 89.9
2113 Female, age 91, right hemisphere 88.1
1892 Male, age 76, both hemispheres 83.0
2249 Male, age 74, both hemispheres 78.9
2437 Female, age 94, left hemisphere 76.7
Hippocampus, CA3
nTPM: 86.9
2620 Female, age 94, left hemisphere 94.8
2436 Male, age 74, both hemispheres 90.7
2137 Male, age 80, left hemisphere 89.8
2861 Female, age 67, both hemispheres 86.4
1891 Female, age 85, both hemispheres 81.4
1867 Male, age 76, both hemispheres 78.6
Parahippocampal cortex
nTPM: 86.5
1850 Male, age 80, both hemispheres 93.1
2622 Female, age 67, right hemisphere 92.9
1933 Female, age 85, both hemispheres 90.8
2692 Male, age 74, both hemispheres 87.5
2693 Female, age 94, both hemispheres 85.8
1990 Female, age 91, right hemisphere 83.4
2245 Female, age 91, both hemispheres 83.4
2018 Male, age 76, both hemispheres 82.7
2250 Female, age 67, right hemisphere 82.6
2532 Female, age 72, left hemisphere 82.4
Perirhinal gyrus
nTPM: 90.3
2521 Female, age 94, right hemisphere 97.2
1847 Female, age 91, left hemisphere 93.9
1794 Male, age 80, right hemisphere 91.9
1841 Female, age 85, right hemisphere 85.0
2848 Male, age 76, right hemisphere 83.4
Subiculum
nTPM: 79.8
2619 Male, age 74, both hemispheres 85.3
1977 Female, age 85, both hemispheres 83.1
2729 Female, age 91, right hemisphere 81.9
2438 Female, age 94, left hemisphere 79.7
1901 Male, age 80, both hemispheres 77.0
2042 Male, age 76, both hemispheres 71.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 35.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 35.1
Samples: 197

Max nTPM: 58.3
Min nTPM: 14.9
Std nTPM: 6.1
Median nTPM: 35.5
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 58.3
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 48.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 47.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 47.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 47.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 46.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 46.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 45.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 45.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 44.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 44.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 145.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 145.6
FF:10169-103B7 60 years, female 180.7
FF:10153-102I9 76 years, female 110.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 31.0
Pig sample Sample description nTPM
Subiculum
nTPM: 30.7
Samples: 4

Max nTPM: 35.2
Min nTPM: 27.3
Sample A Female 35.2
Sample B Female 27.3
Sample C Male 32.6
Sample D Male 27.6
Dorsal hippocampus
nTPM: 28.8
Samples: 4

Max nTPM: 32.7
Min nTPM: 21.9
Sample A Female 32.7
Sample B Female 29.4
Sample C Male 31.0
Sample D Male 21.9
Entorhinal cortex
nTPM: 29.7
Samples: 4

Max nTPM: 32.5
Min nTPM: 27.8
Sample A Female 32.5
Sample B Female 27.9
Sample C Male 30.6
Sample D Male 27.8
Ventral hippocampus
nTPM: 31.0
Samples: 4

Max nTPM: 40.9
Min nTPM: 23.5
Sample A Female 30.4
Sample B Female 23.5
Sample C Male 40.9
Sample D Male 29.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 26.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.2
Samples: 4

Max nTPM: 37.0
Min nTPM: 20.4
Sample A Male 24.1
Sample B Male 20.4
Sample C Female 23.2
Sample D Female 37.0
Hippocampal formation
nTPM: 21.9
Samples: 4

Max nTPM: 30.9
Min nTPM: 12.1
Sample A Male 12.1
Sample B Male 27.1
Sample C Female 30.9
Sample D Female 17.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.5
71232607 Antisense, RP_050412_02_H01, Mouse strain C57BL/6J (56 days, male) 4.5

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