HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:33.3 nTPM
HPA Brain:93.0 nTPM
GTEx:33.3 nTPM
FANTOM5:106.6 Scaled Tags Per Million
Pig:45.9 nTPM
Mouse:82.8 nTPM
Allen mouse:10.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA050329
Glial cells Not detected
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 93.0
Sample id Sample description nTPM
Hippocampus
nTPM: 82.0
1855 Male, age 76, left hemisphere 90.4
2148 Female, age 91, left hemisphere 88.8
1898 Male, age 80, left hemisphere 84.0
2621 Female, age 67, right hemisphere 80.7
1911 Female, age 85, right hemisphere 78.8
2529 Female, age 94, left hemisphere 69.3
Dentate gyrus
nTPM: 84.6
1927 Female, age 91, both hemispheres 94.5
2530 Female, age 94, left hemisphere 89.1
2531 Female, age 67, both hemispheres 88.3
2246 Female, age 85, both hemispheres 81.0
2010 Male, age 76, both hemispheres 79.8
2528 Male, age 74, both hemispheres 74.9
Entorhinal gyrus
nTPM: 90.4
2613 Female, age 94, left hemisphere 127.6
2764 Male, age 80, right hemisphere 94.8
1938 Female, age 85, left hemisphere 91.7
1787 Male, age 76, left hemisphere 83.2
2686 Male, age 75, right hemisphere 79.1
2117 Female, age 91, right hemisphere 66.1
Hippocampus, CA1
nTPM: 87.4
2749 Male, age 80, left hemisphere 112.9
1873 Female, age 85, both hemispheres 87.3
2045 Male, age 76, both hemispheres 83.6
2527 Male, age 74, both hemispheres 78.5
2082 Female, age 91, right hemisphere 74.9
Hippocampus, CA2
nTPM: 80.5
1963 Male, age 80, left hemisphere 92.6
1892 Male, age 76, both hemispheres 86.9
1940 Female, age 85, left hemisphere 83.2
2437 Female, age 94, left hemisphere 78.7
2113 Female, age 91, right hemisphere 72.7
2249 Male, age 74, both hemispheres 68.7
Hippocampus, CA3
nTPM: 93.0
2620 Female, age 94, left hemisphere 128.3
2137 Male, age 80, left hemisphere 105.9
2861 Female, age 67, both hemispheres 91.8
1867 Male, age 76, both hemispheres 81.9
2436 Male, age 74, both hemispheres 80.5
1891 Female, age 85, both hemispheres 69.6
Parahippocampal cortex
nTPM: 82.4
2622 Female, age 67, right hemisphere 91.1
1850 Male, age 80, both hemispheres 88.3
1933 Female, age 85, both hemispheres 86.8
2245 Female, age 91, both hemispheres 84.9
2693 Female, age 94, both hemispheres 84.5
2692 Male, age 74, both hemispheres 80.5
1990 Female, age 91, right hemisphere 79.3
2018 Male, age 76, both hemispheres 78.6
2532 Female, age 72, left hemisphere 77.9
2250 Female, age 67, right hemisphere 72.0
Perirhinal gyrus
nTPM: 89.5
1847 Female, age 91, left hemisphere 96.8
1794 Male, age 80, right hemisphere 93.8
2521 Female, age 94, right hemisphere 93.0
2848 Male, age 76, right hemisphere 84.3
1841 Female, age 85, right hemisphere 79.8
Subiculum
nTPM: 71.8
1901 Male, age 80, both hemispheres 76.8
1977 Female, age 85, both hemispheres 75.2
2729 Female, age 91, right hemisphere 70.9
2438 Female, age 94, left hemisphere 70.7
2619 Male, age 74, both hemispheres 69.5
2042 Male, age 76, both hemispheres 67.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 33.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 33.3
Samples: 197

Max nTPM: 63.5
Min nTPM: 13.5
Std nTPM: 9.3
Median nTPM: 32.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 63.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 61.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 58.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 55.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 53.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 53.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 53.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 52.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 52.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 48.8
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 47.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 106.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 106.6
FF:10169-103B7 60 years, female 140.2
FF:10153-102I9 76 years, female 73.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 45.9
Pig sample Sample description nTPM
Subiculum
nTPM: 31.8
Samples: 4

Max nTPM: 42.8
Min nTPM: 25.3
Sample A Female 42.8
Sample B Female 30.2
Sample C Male 28.8
Sample D Male 25.3
Dorsal hippocampus
nTPM: 45.9
Samples: 4

Max nTPM: 63.4
Min nTPM: 28.3
Sample A Female 63.4
Sample B Female 53.9
Sample C Male 28.3
Sample D Male 38.0
Entorhinal cortex
nTPM: 33.1
Samples: 4

Max nTPM: 38.3
Min nTPM: 27.1
Sample A Female 38.3
Sample B Female 32.0
Sample C Male 35.1
Sample D Male 27.1
Ventral hippocampus
nTPM: 40.8
Samples: 4

Max nTPM: 45.2
Min nTPM: 28.6
Sample A Female 44.8
Sample B Female 28.6
Sample C Male 45.2
Sample D Male 44.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 82.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 69.5
Samples: 4

Max nTPM: 74.6
Min nTPM: 63.9
Sample A Male 66.3
Sample B Male 63.9
Sample C Female 74.6
Sample D Female 73.0
Hippocampal formation
nTPM: 82.8
Samples: 4

Max nTPM: 87.1
Min nTPM: 77.0
Sample A Male 87.1
Sample B Male 77.0
Sample C Female 82.0
Sample D Female 85.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.7
69169397 Antisense, RP_050321_03_E02, Mouse strain C57BL/6J (56 days, male) 10.7

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