MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:128.8 nTPM
HPA Brain:58.3 nTPM
GTEx:128.8 nTPM
FANTOM5:210.4 Scaled Tags Per Million
Pig:18.8 nTPM
Mouse:266.3 nTPM
Allen mouse:9.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.0
2586 Male, age 75, left hemisphere 60.2
2019 Male, age 18, unknown 56.6
2219 Male, age 76, both hemispheres 54.1
1870 Female, age 42, unknown 51.1
2411 Female, age 72, unknown 50.6
1827 Male, age 72, unknown 48.6
2828 Female, age 72, unknown 46.8
1830 Male, age 51, unknown 45.3
2666 Male, age 74, left hemisphere 43.8
1833 Male, age 53, unknown 42.6
Dorsal raphe nucleus
nTPM: 49.2
2047 Male, age 72, unknown 51.3
2750 Male, age 76, both hemispheres 51.3
2298 Female, age 72, unknown 50.0
1828 Male, age 53, unknown 49.8
2016 Female, age 72, unknown 43.7
Inferior colliculus
nTPM: 44.4
1890 Male, age 53, unknown 47.6
2097 Female, age 72, unknown 47.4
1848 Female, age 42, unknown 42.1
2849 Male, age 72, unknown 40.4
Median raphe nucleus
nTPM: 49.5
2220 Male, age 76, midline 49.5
Periaquaductal grey, anterior
nTPM: 51.0
1795 Male, age 51, unknown 52.6
1947 Male, age 18, unknown 51.8
2502 Female, age 75, unknown 48.5
Periaquaductal grey, dorsal
nTPM: 42.3
2464 Female, age 72, unknown 45.5
1831 Male, age 72, unknown 42.7
1840 Male, age 53, unknown 41.1
2850 Male, age 76, both hemispheres 40.1
Periaquaductal grey, lateral
nTPM: 39.4
2053 Male, age 18, unknown 41.5
2272 Male, age 74, both hemispheres 39.2
2140 Male, age 76, both hemispheres 37.6
Pretectal area
nTPM: 51.1
2007 Male, age 72, unknown 64.9
1816 Male, age 51, unknown 60.2
1817 Female, age 42, unknown 57.4
2667 Female, age 75, unknown 56.7
1815 Male, age 53, unknown 55.4
1944 Female, age 72, unknown 55.1
2316 Male, age 76, right hemisphere 43.6
2224 Female, age 72, unknown 42.7
2825 Male, age 18, unknown 42.6
2407 Male, age 75, both hemispheres 42.4
2273 Male, age 74, both hemispheres 40.9
Red nucleus
nTPM: 55.9
2588 Male, age 74, left hemisphere 65.2
1865 Male, age 51, unknown 59.9
1821 Female, age 72, unknown 59.8
2785 Male, age 18, unknown 59.6
1904 Male, age 53, unknown 59.3
2725 Female, age 75, unknown 54.8
2503 Female, age 72, unknown 54.4
1954 Female, age 42, unknown 53.6
2769 Male, age 72, unknown 53.6
2227 Male, age 72, unknown 53.0
2823 Male, age 76, right hemisphere 49.5
2584 Male, age 75, left hemisphere 48.4
Substantia nigra
nTPM: 58.3
1916 Female, age 42, unknown 74.5
1851 Male, age 51, unknown 66.9
2665 Male, age 74, both hemispheres 64.8
1941 Male, age 53, unknown 62.9
2583 Male, age 75, right hemisphere 55.1
2699 Male, age 18, unknown 53.8
1889 Female, age 72, unknown 53.4
2241 Male, age 72, unknown 53.1
2409 Female, age 72, unknown 51.1
2590 Female, age 75, unknown 47.6
Superior colliculus
nTPM: 49.4
2668 Female, age 75, unknown 56.8
2087 Female, age 72, unknown 56.0
1796 Male, age 53, unknown 52.0
1913 Female, age 42, unknown 51.0
1995 Male, age 72, unknown 48.5
1895 Male, age 76, right hemisphere 48.1
2261 Male, age 18, unknown 48.0
2587 Male, age 74, left hemisphere 46.2
2664 Male, age 75, both hemispheres 46.0
1839 Male, age 51, unknown 41.7
Ventral tegmental area
nTPM: 55.2
2410 Female, age 72, unknown 68.1
1915 Female, age 42, unknown 60.3
2223 Female, age 72, unknown 56.7
2218 Male, age 76, both hemispheres 55.3
1942 Male, age 51, unknown 46.1
2021 Male, age 53, unknown 44.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 128.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 128.8
Samples: 139

Max nTPM: 426.4
Min nTPM: 44.2
Std nTPM: 47.7
Median nTPM: 118.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 426.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 324.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 244.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 230.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 212.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 207.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 201.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 199.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 193.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 192.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 191.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 210.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 210.4
FF:10158-103A5 76 years, female 210.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.9
Samples: 4

Max nTPM: 18.3
Min nTPM: 16.9
Sample A Female 18.0
Sample B Female 18.3
Sample C Male 16.9
Sample D Male 18.2
Midbrain
nTPM: 18.9
Samples: 4

Max nTPM: 22.0
Min nTPM: 15.9
Sample A Female 15.9
Sample B Female 19.4
Sample C Male 22.0
Sample D Male 18.1
Periaqueductal gray
nTPM: 17.7
Samples: 3

Max nTPM: 19.6
Min nTPM: 16.1
Sample B Female 19.6
Sample C Male 16.1
Sample D Male 17.4
Superior colliculi
nTPM: 18.8
Samples: 4

Max nTPM: 21.4
Min nTPM: 16.7
Sample A Female 18.6
Sample B Female 18.4
Sample C Male 21.4
Sample D Male 16.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 266.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 266.3
Samples: 4

Max nTPM: 332.4
Min nTPM: 212.2
Sample A Male 332.4
Sample B Male 238.9
Sample C Female 212.2
Sample D Female 281.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.7
68203447 Antisense, RP_041018_01_C12, Mouse strain C57BL/6J (56 days, male) 9.7
67870133 Antisense, RP_041018_01_C12, Mouse strain C57BL/6J (56 days, male) 9.2

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