MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.1 nTPM
HPA Brain:45.6 nTPM
GTEx:1.1 nTPM
FANTOM5:11.6 Scaled Tags Per Million
Pig:29.2 nTPM
Mouse:5.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.9
1827 Male, age 72, unknown 52.9
2019 Male, age 18, unknown 41.1
1830 Male, age 51, unknown 40.2
1833 Male, age 53, unknown 39.7
1870 Female, age 42, unknown 38.5
2411 Female, age 72, unknown 35.8
2828 Female, age 72, unknown 34.6
2666 Male, age 74, left hemisphere 34.3
2586 Male, age 75, left hemisphere 32.3
2219 Male, age 76, both hemispheres 29.5
Dorsal raphe nucleus
nTPM: 34.0
2016 Female, age 72, unknown 41.5
1828 Male, age 53, unknown 34.8
2298 Female, age 72, unknown 34.6
2750 Male, age 76, both hemispheres 29.9
2047 Male, age 72, unknown 29.3
Inferior colliculus
nTPM: 44.2
2849 Male, age 72, unknown 58.2
1890 Male, age 53, unknown 45.4
1848 Female, age 42, unknown 42.1
2097 Female, age 72, unknown 31.1
Median raphe nucleus
nTPM: 37.4
2220 Male, age 76, midline 37.4
Periaquaductal grey, anterior
nTPM: 33.5
2502 Female, age 75, unknown 35.4
1795 Male, age 51, unknown 33.9
1947 Male, age 18, unknown 31.3
Periaquaductal grey, dorsal
nTPM: 45.6
2850 Male, age 76, both hemispheres 50.3
1840 Male, age 53, unknown 48.5
1831 Male, age 72, unknown 42.5
2464 Female, age 72, unknown 41.2
Periaquaductal grey, lateral
nTPM: 34.3
2140 Male, age 76, both hemispheres 44.1
2053 Male, age 18, unknown 32.4
2272 Male, age 74, both hemispheres 26.5
Pretectal area
nTPM: 38.9
1944 Female, age 72, unknown 53.8
2007 Male, age 72, unknown 47.0
2316 Male, age 76, right hemisphere 44.4
1816 Male, age 51, unknown 41.9
2825 Male, age 18, unknown 40.8
2407 Male, age 75, both hemispheres 39.1
1815 Male, age 53, unknown 37.6
2224 Female, age 72, unknown 34.4
1817 Female, age 42, unknown 34.3
2667 Female, age 75, unknown 32.9
2273 Male, age 74, both hemispheres 21.5
Red nucleus
nTPM: 38.3
2725 Female, age 75, unknown 50.2
1821 Female, age 72, unknown 49.4
2785 Male, age 18, unknown 39.2
2503 Female, age 72, unknown 38.9
1954 Female, age 42, unknown 37.7
2588 Male, age 74, left hemisphere 36.8
2823 Male, age 76, right hemisphere 36.4
1865 Male, age 51, unknown 35.4
2227 Male, age 72, unknown 35.1
1904 Male, age 53, unknown 33.9
2769 Male, age 72, unknown 33.6
2584 Male, age 75, left hemisphere 32.4
Substantia nigra
nTPM: 42.3
2409 Female, age 72, unknown 88.7
1941 Male, age 53, unknown 45.5
2699 Male, age 18, unknown 42.7
1889 Female, age 72, unknown 41.8
1916 Female, age 42, unknown 41.7
2241 Male, age 72, unknown 40.6
2590 Female, age 75, unknown 35.3
1851 Male, age 51, unknown 34.9
2583 Male, age 75, right hemisphere 26.4
2665 Male, age 74, both hemispheres 25.5
Superior colliculus
nTPM: 43.0
2664 Male, age 75, both hemispheres 61.5
1895 Male, age 76, right hemisphere 52.6
1839 Male, age 51, unknown 46.4
1796 Male, age 53, unknown 45.5
1913 Female, age 42, unknown 44.6
2087 Female, age 72, unknown 42.0
2668 Female, age 75, unknown 39.2
2587 Male, age 74, left hemisphere 36.1
2261 Male, age 18, unknown 35.7
1995 Male, age 72, unknown 26.1
Ventral tegmental area
nTPM: 34.4
2218 Male, age 76, both hemispheres 42.3
1915 Female, age 42, unknown 36.7
2410 Female, age 72, unknown 36.4
2223 Female, age 72, unknown 34.5
1942 Male, age 51, unknown 31.4
2021 Male, age 53, unknown 25.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.1
Samples: 139

Max nTPM: 2.6
Min nTPM: 0.0
Std nTPM: 0.4
Median nTPM: 1.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 2.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 2.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 2.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 2.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 2.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 1.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 1.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.6
FF:10158-103A5 76 years, female 11.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.7
Samples: 4

Max nTPM: 29.4
Min nTPM: 14.4
Sample A Female 14.4
Sample B Female 27.1
Sample C Male 23.8
Sample D Male 29.4
Midbrain
nTPM: 23.9
Samples: 4

Max nTPM: 30.6
Min nTPM: 13.9
Sample A Female 13.9
Sample B Female 27.6
Sample C Male 23.3
Sample D Male 30.6
Periaqueductal gray
nTPM: 29.2
Samples: 3

Max nTPM: 32.5
Min nTPM: 24.9
Sample B Female 30.3
Sample C Male 24.9
Sample D Male 32.5
Superior colliculi
nTPM: 20.0
Samples: 4

Max nTPM: 22.7
Min nTPM: 14.0
Sample A Female 14.0
Sample B Female 21.4
Sample C Male 22.7
Sample D Male 22.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.3
Samples: 4

Max nTPM: 5.7
Min nTPM: 4.6
Sample A Male 5.7
Sample B Male 5.3
Sample C Female 4.6
Sample D Female 5.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70231791 Antisense, RP_050526_01_H10, Mouse strain C57BL/6J (56 days, male) 0.0

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