MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:60.6 nTPM
HPA Brain:109.2 nTPM
GTEx:60.6 nTPM
FANTOM5:36.9 Scaled Tags Per Million
Pig:128.2 nTPM
Mouse:334.9 nTPM
Allen mouse:9.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 109.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.0
2219 Male, age 76, both hemispheres 91.5
2666 Male, age 74, left hemisphere 79.9
1827 Male, age 72, unknown 67.3
1833 Male, age 53, unknown 64.3
2019 Male, age 18, unknown 62.4
1830 Male, age 51, unknown 57.9
2411 Female, age 72, unknown 57.3
2586 Male, age 75, left hemisphere 51.8
1870 Female, age 42, unknown 50.9
2828 Female, age 72, unknown 46.7
Dorsal raphe nucleus
nTPM: 57.6
2298 Female, age 72, unknown 68.9
2047 Male, age 72, unknown 67.7
1828 Male, age 53, unknown 60.0
2750 Male, age 76, both hemispheres 53.4
2016 Female, age 72, unknown 37.8
Inferior colliculus
nTPM: 55.1
2849 Male, age 72, unknown 80.0
1848 Female, age 42, unknown 48.6
2097 Female, age 72, unknown 48.3
1890 Male, age 53, unknown 43.5
Median raphe nucleus
nTPM: 109.2
2220 Male, age 76, midline 109.2
Periaquaductal grey, anterior
nTPM: 62.0
1947 Male, age 18, unknown 70.4
1795 Male, age 51, unknown 61.3
2502 Female, age 75, unknown 54.3
Periaquaductal grey, dorsal
nTPM: 55.0
2850 Male, age 76, both hemispheres 78.6
1840 Male, age 53, unknown 56.7
1831 Male, age 72, unknown 42.7
2464 Female, age 72, unknown 41.8
Periaquaductal grey, lateral
nTPM: 53.5
2272 Male, age 74, both hemispheres 67.3
2140 Male, age 76, both hemispheres 50.7
2053 Male, age 18, unknown 42.6
Pretectal area
nTPM: 69.0
1944 Female, age 72, unknown 91.6
1817 Female, age 42, unknown 91.2
1816 Male, age 51, unknown 84.0
2007 Male, age 72, unknown 83.0
2667 Female, age 75, unknown 82.0
1815 Male, age 53, unknown 66.9
2224 Female, age 72, unknown 63.8
2273 Male, age 74, both hemispheres 55.6
2825 Male, age 18, unknown 53.1
2407 Male, age 75, both hemispheres 50.3
2316 Male, age 76, right hemisphere 37.9
Red nucleus
nTPM: 56.4
1821 Female, age 72, unknown 77.3
1954 Female, age 42, unknown 71.2
2588 Male, age 74, left hemisphere 70.1
2725 Female, age 75, unknown 57.7
2785 Male, age 18, unknown 57.5
2584 Male, age 75, left hemisphere 55.6
1865 Male, age 51, unknown 51.3
2227 Male, age 72, unknown 49.8
2769 Male, age 72, unknown 48.8
1904 Male, age 53, unknown 48.1
2823 Male, age 76, right hemisphere 45.4
2503 Female, age 72, unknown 44.0
Substantia nigra
nTPM: 71.7
1916 Female, age 42, unknown 113.2
1941 Male, age 53, unknown 95.2
1889 Female, age 72, unknown 88.0
2241 Male, age 72, unknown 76.7
1851 Male, age 51, unknown 75.1
2699 Male, age 18, unknown 73.2
2409 Female, age 72, unknown 58.5
2665 Male, age 74, both hemispheres 55.7
2590 Female, age 75, unknown 50.9
2583 Male, age 75, right hemisphere 30.8
Superior colliculus
nTPM: 50.6
1796 Male, age 53, unknown 67.0
2087 Female, age 72, unknown 60.0
2261 Male, age 18, unknown 59.0
2668 Female, age 75, unknown 58.1
1895 Male, age 76, right hemisphere 53.9
1839 Male, age 51, unknown 53.5
2587 Male, age 74, left hemisphere 46.8
2664 Male, age 75, both hemispheres 44.7
1913 Female, age 42, unknown 35.2
1995 Male, age 72, unknown 27.8
Ventral tegmental area
nTPM: 70.9
2410 Female, age 72, unknown 98.0
2218 Male, age 76, both hemispheres 87.6
1915 Female, age 42, unknown 84.3
2223 Female, age 72, unknown 61.2
1942 Male, age 51, unknown 51.9
2021 Male, age 53, unknown 42.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 60.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.6
Samples: 139

Max nTPM: 253.8
Min nTPM: 9.2
Std nTPM: 42.4
Median nTPM: 47.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 253.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 206.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 160.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 158.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 145.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 143.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 135.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 135.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 134.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 131.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 128.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.9
FF:10158-103A5 76 years, female 36.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 128.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 83.3
Samples: 4

Max nTPM: 126.7
Min nTPM: 45.4
Sample A Female 126.7
Sample B Female 58.6
Sample C Male 102.3
Sample D Male 45.4
Midbrain
nTPM: 107.7
Samples: 4

Max nTPM: 169.6
Min nTPM: 57.7
Sample A Female 57.7
Sample B Female 78.4
Sample C Male 169.6
Sample D Male 125.0
Periaqueductal gray
nTPM: 87.5
Samples: 3

Max nTPM: 97.8
Min nTPM: 80.3
Sample B Female 84.5
Sample C Male 97.8
Sample D Male 80.3
Superior colliculi
nTPM: 128.3
Samples: 4

Max nTPM: 176.5
Min nTPM: 66.1
Sample A Female 157.0
Sample B Female 66.1
Sample C Male 176.5
Sample D Male 113.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 334.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 335.0
Samples: 4

Max nTPM: 342.8
Min nTPM: 330.2
Sample A Male 330.2
Sample B Male 334.3
Sample C Female 332.5
Sample D Female 342.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.0
70616005 Antisense, RP_050725_01_D08, Mouse strain C57BL/6J (56 days, male) 10.7
564648 Antisense, RP_040826_01_B04, Mouse strain C57BL/6J (56 days, male) 7.4

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