MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:109.9 nTPM
HPA Brain:64.2 nTPM
GTEx:109.9 nTPM
FANTOM5:115.1 Scaled Tags Per Million
Pig:76.1 nTPM
Mouse:36.7 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.4
1870 Female, age 42, unknown 51.6
2219 Male, age 76, both hemispheres 47.3
2828 Female, age 72, unknown 46.3
2019 Male, age 18, unknown 45.6
2411 Female, age 72, unknown 45.5
1827 Male, age 72, unknown 44.9
1833 Male, age 53, unknown 43.5
1830 Male, age 51, unknown 43.3
2666 Male, age 74, left hemisphere 40.6
2586 Male, age 75, left hemisphere 35.1
Dorsal raphe nucleus
nTPM: 45.8
1828 Male, age 53, unknown 48.4
2750 Male, age 76, both hemispheres 46.7
2047 Male, age 72, unknown 45.5
2016 Female, age 72, unknown 44.5
2298 Female, age 72, unknown 43.9
Inferior colliculus
nTPM: 48.9
2849 Male, age 72, unknown 57.9
1890 Male, age 53, unknown 53.3
1848 Female, age 42, unknown 43.2
2097 Female, age 72, unknown 41.3
Median raphe nucleus
nTPM: 64.2
2220 Male, age 76, midline 64.2
Periaquaductal grey, anterior
nTPM: 42.3
1947 Male, age 18, unknown 44.8
2502 Female, age 75, unknown 43.5
1795 Male, age 51, unknown 38.7
Periaquaductal grey, dorsal
nTPM: 53.5
2850 Male, age 76, both hemispheres 72.6
1840 Male, age 53, unknown 51.5
2464 Female, age 72, unknown 47.4
1831 Male, age 72, unknown 42.5
Periaquaductal grey, lateral
nTPM: 45.6
2140 Male, age 76, both hemispheres 54.4
2053 Male, age 18, unknown 41.2
2272 Male, age 74, both hemispheres 41.2
Pretectal area
nTPM: 47.3
2667 Female, age 75, unknown 54.9
2407 Male, age 75, both hemispheres 51.2
2007 Male, age 72, unknown 50.0
1815 Male, age 53, unknown 49.7
1817 Female, age 42, unknown 49.6
1944 Female, age 72, unknown 47.2
1816 Male, age 51, unknown 46.2
2825 Male, age 18, unknown 45.7
2224 Female, age 72, unknown 45.3
2273 Male, age 74, both hemispheres 41.6
2316 Male, age 76, right hemisphere 39.3
Red nucleus
nTPM: 51.4
1865 Male, age 51, unknown 58.4
1954 Female, age 42, unknown 56.8
2823 Male, age 76, right hemisphere 56.5
1821 Female, age 72, unknown 56.1
1904 Male, age 53, unknown 55.3
2503 Female, age 72, unknown 53.7
2725 Female, age 75, unknown 53.6
2785 Male, age 18, unknown 50.0
2227 Male, age 72, unknown 49.9
2584 Male, age 75, left hemisphere 44.4
2769 Male, age 72, unknown 44.1
2588 Male, age 74, left hemisphere 38.1
Substantia nigra
nTPM: 51.2
2699 Male, age 18, unknown 61.9
1916 Female, age 42, unknown 60.1
2409 Female, age 72, unknown 56.8
2241 Male, age 72, unknown 56.7
1851 Male, age 51, unknown 51.7
1889 Female, age 72, unknown 51.3
1941 Male, age 53, unknown 50.2
2665 Male, age 74, both hemispheres 50.1
2590 Female, age 75, unknown 37.9
2583 Male, age 75, right hemisphere 35.4
Superior colliculus
nTPM: 43.4
1895 Male, age 76, right hemisphere 50.1
2587 Male, age 74, left hemisphere 48.6
1913 Female, age 42, unknown 47.4
2668 Female, age 75, unknown 45.7
2087 Female, age 72, unknown 43.8
1995 Male, age 72, unknown 43.7
1839 Male, age 51, unknown 41.1
1796 Male, age 53, unknown 40.4
2261 Male, age 18, unknown 37.1
2664 Male, age 75, both hemispheres 36.3
Ventral tegmental area
nTPM: 51.0
2218 Male, age 76, both hemispheres 56.3
1915 Female, age 42, unknown 56.0
1942 Male, age 51, unknown 51.7
2223 Female, age 72, unknown 50.0
2410 Female, age 72, unknown 49.6
2021 Male, age 53, unknown 42.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 109.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 109.9
Samples: 139

Max nTPM: 202.5
Min nTPM: 32.5
Std nTPM: 29.1
Median nTPM: 108.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 202.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 178.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 177.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 176.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 167.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 162.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 161.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 161.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 160.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 157.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 157.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.1
FF:10158-103A5 76 years, female 115.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 76.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 71.8
Samples: 4

Max nTPM: 95.5
Min nTPM: 55.0
Sample A Female 95.5
Sample B Female 61.5
Sample C Male 75.0
Sample D Male 55.0
Midbrain
nTPM: 75.0
Samples: 4

Max nTPM: 89.2
Min nTPM: 63.7
Sample A Female 89.2
Sample B Female 72.7
Sample C Male 63.7
Sample D Male 74.5
Periaqueductal gray
nTPM: 70.9
Samples: 3

Max nTPM: 75.7
Min nTPM: 64.0
Sample B Female 73.1
Sample C Male 75.7
Sample D Male 64.0
Superior colliculi
nTPM: 76.2
Samples: 4

Max nTPM: 88.6
Min nTPM: 59.3
Sample A Female 80.6
Sample B Female 59.3
Sample C Male 88.6
Sample D Male 76.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.7
Samples: 4

Max nTPM: 42.1
Min nTPM: 33.6
Sample A Male 42.1
Sample B Male 33.6
Sample C Female 34.4
Sample D Female 36.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
79544852 Antisense, RP_071101_01_A11, Mouse strain C57BL/6J (56 days, male) 0.7

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