BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:27.0 nTPM
HPA Brain:116.9 nTPM
GTEx:27.0 nTPM
FANTOM5:45.7 Scaled Tags Per Million
Pig:27.5 nTPM
Mouse:72.7 nTPM
Allen mouse:2.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA017598
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 116.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 103.6
2289 Male, age 61, right hemisphere 142.0
2290 Female, age 72, unknown 108.4
1781 Male, age 74, unknown 105.3
2288 Male, age 75, left hemisphere 103.7
2846 Female, age 79, unknown 102.5
1857 Female, age 85, left hemisphere 97.1
1854 Male, age 80, left hemisphere 92.6
2481 Female, age 94, left hemisphere 77.0
Globus pallidus, externus
nTPM: 86.8
2567 Female, age 72, unknown 122.3
2646 Male, age 61, right hemisphere 100.6
2772 Female, age 79, unknown 79.3
1996 Male, age 80, right hemisphere 67.3
2395 Male, age 75, both hemispheres 64.7
Globus pallidus, internus
nTPM: 73.7
2566 Female, age 72, unknown 103.8
2111 Female, age 85, right hemisphere 86.4
1818 Male, age 74, unknown 75.1
2483 Female, age 94, right hemisphere 69.8
2287 Male, age 75, right hemisphere 68.8
2037 Male, age 80, right hemisphere 59.5
2778 Female, age 91, both hemispheres 52.6
Nucleus accumbens
nTPM: 99.6
2824 Male, age 61, right hemisphere 144.6
1783 Male, age 74, unknown 113.8
1806 Female, age 85, left hemisphere 100.5
2286 Male, age 75, left hemisphere 98.4
1856 Female, age 91, right hemisphere 90.6
2698 Female, age 72, unknown 90.3
2732 Male, age 80, right hemisphere 81.8
2391 Female, age 94, left hemisphere 77.1
Nucleus basalis of Meynert
nTPM: 98.1
2484 Female, age 94, left hemisphere 110.3
2569 Male, age 61, both hemispheres 106.8
2393 Male, age 80, right hemisphere 88.2
2821 Male, age 75, both hemispheres 86.9
Nucleus of the diagonal band
nTPM: 113.1
2195 Female, age 85, both hemispheres 135.5
2029 Male, age 61, right hemisphere 131.8
2775 Male, age 80, right hemisphere 105.9
1812 Female, age 91, both hemispheres 97.5
1979 Male, age 74, unknown 94.9
Putamen
nTPM: 104.2
2647 Male, age 75, left hemisphere 126.8
2489 Female, age 72, unknown 115.6
1829 Male, age 74, unknown 107.1
2466 Female, age 79, unknown 101.1
1838 Male, age 80, right hemisphere 96.1
1937 Female, age 91, right hemisphere 95.2
2482 Female, age 94, left hemisphere 87.8
Septal nuclei
nTPM: 106.5
1960 Male, age 74, unknown 126.0
2059 Female, age 85, both hemispheres 124.3
2394 Male, age 61, left hemisphere 118.9
2629 Female, age 94, right hemisphere 113.0
2009 Female, age 91, both hemispheres 95.3
2031 Female, age 72, unknown 91.4
2199 Male, age 80, right hemisphere 76.8
Stria terminalis, bed nucleus
nTPM: 116.9
2486 Female, age 94, both hemispheres 131.7
2201 Male, age 74, unknown 114.2
1974 Female, age 91, both hemispheres 104.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 27.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.2
Samples: 246

Max nTPM: 42.2
Min nTPM: 8.8
Std nTPM: 6.1
Median nTPM: 22.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 42.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 39.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 38.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 37.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 37.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 36.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 34.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 34.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 34.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 33.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 33.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.0
Samples: 246

Max nTPM: 47.8
Min nTPM: 5.7
Std nTPM: 7.6
Median nTPM: 28.3
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 47.8
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 44.5
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 43.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 42.0
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 41.6
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 40.6
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 40.4
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 40.2
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 39.2
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 39.0
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 38.7
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Brain - Putamen (basal ganglia)
Average nTPM: 23.8
Samples: 205

Max nTPM: 38.4
Min nTPM: 13.1
Std nTPM: 5.1
Median nTPM: 23.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 38.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 37.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 35.5
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 34.4
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 34.2
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 33.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 33.5
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 33.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 33.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 33.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 32.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 37.5
FF:10164-103B2 76 years, female 37.5
Nucleus accumbens
Scaled Tags Per Million: 40.9
FF:10037-101F1 23-56 years, mixed 40.9
Putamen
Scaled Tags Per Million: 45.7
FF:10176-103C5 60 years, female 45.7
Globus pallidus
Scaled Tags Per Million: 29.5
FF:10175-103C4 60 years, female 32.1
FF:10161-103A8 76 years, female 26.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 27.5
Pig sample Sample description nTPM
Caudate
nTPM: 27.4
Samples: 4

Max nTPM: 33.1
Min nTPM: 19.1
Sample A Female 19.1
Sample B Female 28.1
Sample C Male 33.1
Sample D Male 29.2
Putamen
nTPM: 27.5
Samples: 4

Max nTPM: 33.6
Min nTPM: 19.1
Sample A Female 19.1
Sample B Female 24.7
Sample C Male 33.6
Sample D Male 32.7
Septum
nTPM: 21.9
Samples: 4

Max nTPM: 23.9
Min nTPM: 17.9
Sample A Female 22.6
Sample B Female 23.9
Sample C Male 23.1
Sample D Male 17.9
Ventral pallidum
nTPM: 25.7
Samples: 4

Max nTPM: 33.4
Min nTPM: 21.3
Sample A Female 21.3
Sample B Female 23.3
Sample C Male 33.4
Sample D Male 24.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 72.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 60.5
Samples: 4

Max nTPM: 61.6
Min nTPM: 59.9
Sample A Male 60.3
Sample B Male 61.6
Sample C Female 59.9
Sample D Female 60.1
Septum
nTPM: 72.7
Samples: 4

Max nTPM: 76.3
Min nTPM: 68.2
Sample A Male 68.2
Sample B Male 73.6
Sample C Female 72.6
Sample D Female 76.3
Ventral forebrain
nTPM: 65.5
Samples: 4

Max nTPM: 66.6
Min nTPM: 63.8
Sample A Male 65.4
Sample B Male 66.6
Sample C Female 63.8
Sample D Female 66.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.5
70946536 Antisense, RP_050505_01_D06, Mouse strain C57BL/6J (56 days, male) 2.5
Pallidum
Expression energy: 2.6
70946536 Antisense, RP_050505_01_D06, Mouse strain C57BL/6J (56 days, male) 2.6

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