MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.4 nTPM
HPA Brain:30.8 nTPM
GTEx:15.4 nTPM
FANTOM5:20.7 Scaled Tags Per Million
Pig:15.4 nTPM
Mouse:9.1 nTPM
Allen mouse:6.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.5
2586 Male, age 75, left hemisphere 35.9
2828 Female, age 72, unknown 28.3
2666 Male, age 74, left hemisphere 27.5
2019 Male, age 18, unknown 26.8
1827 Male, age 72, unknown 25.2
1870 Female, age 42, unknown 21.0
2411 Female, age 72, unknown 19.5
1833 Male, age 53, unknown 17.7
2219 Male, age 76, both hemispheres 17.5
1830 Male, age 51, unknown 16.1
Dorsal raphe nucleus
nTPM: 21.8
2298 Female, age 72, unknown 25.2
2016 Female, age 72, unknown 23.5
1828 Male, age 53, unknown 22.0
2047 Male, age 72, unknown 20.8
2750 Male, age 76, both hemispheres 17.6
Inferior colliculus
nTPM: 20.3
1890 Male, age 53, unknown 23.7
2097 Female, age 72, unknown 21.5
1848 Female, age 42, unknown 18.1
2849 Male, age 72, unknown 17.9
Median raphe nucleus
nTPM: 23.1
2220 Male, age 76, midline 23.1
Periaquaductal grey, anterior
nTPM: 30.8
1795 Male, age 51, unknown 39.5
2502 Female, age 75, unknown 33.2
1947 Male, age 18, unknown 19.9
Periaquaductal grey, dorsal
nTPM: 26.2
2850 Male, age 76, both hemispheres 29.8
1831 Male, age 72, unknown 29.4
2464 Female, age 72, unknown 22.8
1840 Male, age 53, unknown 22.6
Periaquaductal grey, lateral
nTPM: 29.1
2140 Male, age 76, both hemispheres 32.3
2053 Male, age 18, unknown 29.4
2272 Male, age 74, both hemispheres 25.7
Pretectal area
nTPM: 30.8
1816 Male, age 51, unknown 50.2
2007 Male, age 72, unknown 36.8
1944 Female, age 72, unknown 35.8
1815 Male, age 53, unknown 32.8
1817 Female, age 42, unknown 31.4
2667 Female, age 75, unknown 29.0
2316 Male, age 76, right hemisphere 27.5
2224 Female, age 72, unknown 26.6
2273 Male, age 74, both hemispheres 25.8
2407 Male, age 75, both hemispheres 21.9
2825 Male, age 18, unknown 20.4
Red nucleus
nTPM: 21.5
2785 Male, age 18, unknown 27.7
2584 Male, age 75, left hemisphere 24.8
2588 Male, age 74, left hemisphere 23.9
2725 Female, age 75, unknown 23.7
2503 Female, age 72, unknown 22.1
1904 Male, age 53, unknown 21.6
2227 Male, age 72, unknown 21.5
2823 Male, age 76, right hemisphere 20.3
2769 Male, age 72, unknown 19.5
1954 Female, age 42, unknown 19.1
1821 Female, age 72, unknown 17.0
1865 Male, age 51, unknown 16.3
Substantia nigra
nTPM: 25.3
2665 Male, age 74, both hemispheres 33.7
2409 Female, age 72, unknown 29.4
1889 Female, age 72, unknown 26.6
2583 Male, age 75, right hemisphere 26.6
1851 Male, age 51, unknown 24.4
1916 Female, age 42, unknown 23.8
2699 Male, age 18, unknown 23.7
2590 Female, age 75, unknown 23.4
1941 Male, age 53, unknown 20.7
2241 Male, age 72, unknown 20.4
Superior colliculus
nTPM: 27.4
2261 Male, age 18, unknown 39.2
2087 Female, age 72, unknown 38.9
1796 Male, age 53, unknown 34.7
2664 Male, age 75, both hemispheres 28.2
1995 Male, age 72, unknown 26.3
1913 Female, age 42, unknown 24.8
2668 Female, age 75, unknown 23.3
2587 Male, age 74, left hemisphere 22.7
1839 Male, age 51, unknown 20.7
1895 Male, age 76, right hemisphere 15.3
Ventral tegmental area
nTPM: 22.0
2218 Male, age 76, both hemispheres 24.7
1942 Male, age 51, unknown 23.2
1915 Female, age 42, unknown 22.5
2021 Male, age 53, unknown 22.5
2410 Female, age 72, unknown 20.7
2223 Female, age 72, unknown 18.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.4
Samples: 139

Max nTPM: 95.8
Min nTPM: 5.0
Std nTPM: 10.9
Median nTPM: 12.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 95.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 86.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 42.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 37.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 31.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 31.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 31.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 29.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 27.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 24.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 24.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.7
FF:10158-103A5 76 years, female 20.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.5
Samples: 4

Max nTPM: 22.0
Min nTPM: 8.4
Sample A Female 8.4
Sample B Female 22.0
Sample C Male 19.2
Sample D Male 12.2
Midbrain
nTPM: 14.3
Samples: 4

Max nTPM: 22.7
Min nTPM: 3.8
Sample A Female 12.9
Sample B Female 17.9
Sample C Male 22.7
Sample D Male 3.8
Periaqueductal gray
nTPM: 14.8
Samples: 3

Max nTPM: 20.6
Min nTPM: 5.4
Sample B Female 20.6
Sample C Male 18.4
Sample D Male 5.4
Superior colliculi
nTPM: 15.0
Samples: 4

Max nTPM: 26.4
Min nTPM: 5.7
Sample A Female 7.3
Sample B Female 20.4
Sample C Male 26.4
Sample D Male 5.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.1
Samples: 4

Max nTPM: 12.0
Min nTPM: 6.1
Sample A Male 10.1
Sample B Male 6.1
Sample C Female 8.3
Sample D Female 12.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
69080033 Antisense, RP_050324_01_E11, Mouse strain C57BL/6J (56 days, male) 6.2

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