HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:27.6 nTPM
HPA Brain:16.8 nTPM
GTEx:27.6 nTPM
FANTOM5:38.8 Scaled Tags Per Million
Pig:20.5 nTPM
Mouse:65.1 nTPM
Allen mouse:2.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042930
Glial cells Not detected
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.8
Sample id Sample description nTPM
Hippocampus
nTPM: 13.3
1898 Male, age 80, left hemisphere 16.8
2621 Female, age 67, right hemisphere 13.6
2148 Female, age 91, left hemisphere 13.5
1855 Male, age 76, left hemisphere 12.4
1911 Female, age 85, right hemisphere 12.4
2529 Female, age 94, left hemisphere 11.0
Dentate gyrus
nTPM: 14.0
2010 Male, age 76, both hemispheres 15.8
1927 Female, age 91, both hemispheres 15.6
2246 Female, age 85, both hemispheres 14.1
2528 Male, age 74, both hemispheres 13.5
2530 Female, age 94, left hemisphere 12.5
2531 Female, age 67, both hemispheres 12.2
Entorhinal gyrus
nTPM: 12.9
1787 Male, age 76, left hemisphere 15.2
2764 Male, age 80, right hemisphere 14.6
1938 Female, age 85, left hemisphere 14.1
2613 Female, age 94, left hemisphere 13.4
2117 Female, age 91, right hemisphere 11.0
2686 Male, age 75, right hemisphere 9.4
Hippocampus, CA1
nTPM: 16.8
2749 Male, age 80, left hemisphere 25.1
2045 Male, age 76, both hemispheres 15.6
1873 Female, age 85, both hemispheres 15.0
2082 Female, age 91, right hemisphere 14.5
2527 Male, age 74, both hemispheres 13.9
Hippocampus, CA2
nTPM: 14.8
2249 Male, age 74, both hemispheres 17.8
1892 Male, age 76, both hemispheres 16.6
1963 Male, age 80, left hemisphere 16.1
1940 Female, age 85, left hemisphere 13.9
2437 Female, age 94, left hemisphere 12.4
2113 Female, age 91, right hemisphere 11.9
Hippocampus, CA3
nTPM: 15.2
2137 Male, age 80, left hemisphere 21.2
2436 Male, age 74, both hemispheres 17.5
1867 Male, age 76, both hemispheres 14.7
2620 Female, age 94, left hemisphere 12.9
1891 Female, age 85, both hemispheres 12.6
2861 Female, age 67, both hemispheres 12.0
Parahippocampal cortex
nTPM: 13.1
1850 Male, age 80, both hemispheres 16.4
2018 Male, age 76, both hemispheres 14.6
2250 Female, age 67, right hemisphere 14.5
1990 Female, age 91, right hemisphere 13.4
2693 Female, age 94, both hemispheres 12.8
1933 Female, age 85, both hemispheres 12.7
2245 Female, age 91, both hemispheres 12.7
2532 Female, age 72, left hemisphere 11.7
2692 Male, age 74, both hemispheres 11.4
2622 Female, age 67, right hemisphere 10.9
Perirhinal gyrus
nTPM: 15.8
1847 Female, age 91, left hemisphere 19.6
1794 Male, age 80, right hemisphere 16.4
1841 Female, age 85, right hemisphere 15.4
2521 Female, age 94, right hemisphere 15.2
2848 Male, age 76, right hemisphere 12.2
Subiculum
nTPM: 13.4
1901 Male, age 80, both hemispheres 15.5
2438 Female, age 94, left hemisphere 14.1
1977 Female, age 85, both hemispheres 13.8
2729 Female, age 91, right hemisphere 12.9
2619 Male, age 74, both hemispheres 12.6
2042 Male, age 76, both hemispheres 11.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 27.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 27.6
Samples: 197

Max nTPM: 61.1
Min nTPM: 9.6
Std nTPM: 9.0
Median nTPM: 26.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 61.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 57.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 57.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 55.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 54.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 51.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 50.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 49.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 44.8
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 44.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 44.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 38.8
FF:10169-103B7 60 years, female 46.7
FF:10153-102I9 76 years, female 30.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 20.5
Pig sample Sample description nTPM
Subiculum
nTPM: 20.5
Samples: 4

Max nTPM: 22.3
Min nTPM: 19.4
Sample A Female 19.4
Sample B Female 20.6
Sample C Male 22.3
Sample D Male 19.7
Dorsal hippocampus
nTPM: 18.5
Samples: 4

Max nTPM: 20.2
Min nTPM: 16.0
Sample A Female 17.8
Sample B Female 20.0
Sample C Male 20.2
Sample D Male 16.0
Entorhinal cortex
nTPM: 18.5
Samples: 4

Max nTPM: 19.4
Min nTPM: 17.6
Sample A Female 17.8
Sample B Female 19.3
Sample C Male 19.4
Sample D Male 17.6
Ventral hippocampus
nTPM: 19.2
Samples: 4

Max nTPM: 23.9
Min nTPM: 15.7
Sample A Female 15.7
Sample B Female 18.1
Sample C Male 23.9
Sample D Male 18.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 65.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 65.2
Samples: 4

Max nTPM: 69.0
Min nTPM: 62.6
Sample A Male 62.6
Sample B Male 63.6
Sample C Female 69.0
Sample D Female 65.4
Hippocampal formation
nTPM: 60.6
Samples: 4

Max nTPM: 72.8
Min nTPM: 44.0
Sample A Male 72.8
Sample B Male 44.0
Sample C Female 63.0
Sample D Female 62.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.4
70439093 Antisense, RP_050614_03_B05, Mouse strain C57BL/6J (56 days, male) 2.4

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