MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.0 nTPM
HPA Brain:63.0 nTPM
GTEx:8.0 nTPM
FANTOM5:39.8 Scaled Tags Per Million
Pig:45.6 nTPM
Mouse:35.9 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.8
2019 Male, age 18, unknown 80.7
2666 Male, age 74, left hemisphere 74.2
2586 Male, age 75, left hemisphere 66.0
2411 Female, age 72, unknown 62.9
1827 Male, age 72, unknown 59.8
2219 Male, age 76, both hemispheres 56.4
1833 Male, age 53, unknown 55.1
1870 Female, age 42, unknown 54.9
1830 Male, age 51, unknown 51.3
2828 Female, age 72, unknown 46.4
Dorsal raphe nucleus
nTPM: 54.9
2298 Female, age 72, unknown 60.6
1828 Male, age 53, unknown 58.0
2047 Male, age 72, unknown 56.6
2750 Male, age 76, both hemispheres 52.2
2016 Female, age 72, unknown 47.1
Inferior colliculus
nTPM: 59.1
1848 Female, age 42, unknown 61.3
2849 Male, age 72, unknown 60.2
1890 Male, age 53, unknown 58.0
2097 Female, age 72, unknown 57.0
Median raphe nucleus
nTPM: 55.1
2220 Male, age 76, midline 55.1
Periaquaductal grey, anterior
nTPM: 55.4
2502 Female, age 75, unknown 57.5
1947 Male, age 18, unknown 56.5
1795 Male, age 51, unknown 52.2
Periaquaductal grey, dorsal
nTPM: 53.1
1840 Male, age 53, unknown 56.1
2464 Female, age 72, unknown 54.3
2850 Male, age 76, both hemispheres 53.7
1831 Male, age 72, unknown 48.2
Periaquaductal grey, lateral
nTPM: 44.2
2140 Male, age 76, both hemispheres 50.0
2053 Male, age 18, unknown 42.7
2272 Male, age 74, both hemispheres 39.9
Pretectal area
nTPM: 62.4
2007 Male, age 72, unknown 88.1
1817 Female, age 42, unknown 84.6
1816 Male, age 51, unknown 74.2
1944 Female, age 72, unknown 73.9
1815 Male, age 53, unknown 67.5
2667 Female, age 75, unknown 57.8
2316 Male, age 76, right hemisphere 51.1
2224 Female, age 72, unknown 51.0
2825 Male, age 18, unknown 47.6
2407 Male, age 75, both hemispheres 46.9
2273 Male, age 74, both hemispheres 43.8
Red nucleus
nTPM: 57.6
2785 Male, age 18, unknown 71.8
1821 Female, age 72, unknown 63.7
2588 Male, age 74, left hemisphere 62.3
2725 Female, age 75, unknown 60.6
2503 Female, age 72, unknown 59.1
2769 Male, age 72, unknown 55.5
2227 Male, age 72, unknown 54.4
2823 Male, age 76, right hemisphere 54.4
1954 Female, age 42, unknown 53.6
1865 Male, age 51, unknown 52.6
2584 Male, age 75, left hemisphere 52.4
1904 Male, age 53, unknown 51.1
Substantia nigra
nTPM: 63.0
1941 Male, age 53, unknown 77.8
2665 Male, age 74, both hemispheres 74.4
1889 Female, age 72, unknown 74.1
1916 Female, age 42, unknown 68.9
2241 Male, age 72, unknown 62.9
1851 Male, age 51, unknown 62.4
2583 Male, age 75, right hemisphere 58.2
2409 Female, age 72, unknown 52.5
2590 Female, age 75, unknown 49.7
2699 Male, age 18, unknown 49.1
Superior colliculus
nTPM: 56.5
1895 Male, age 76, right hemisphere 70.9
2668 Female, age 75, unknown 67.0
2087 Female, age 72, unknown 61.5
1839 Male, age 51, unknown 59.8
2587 Male, age 74, left hemisphere 57.3
2261 Male, age 18, unknown 54.0
1796 Male, age 53, unknown 52.9
2664 Male, age 75, both hemispheres 50.5
1913 Female, age 42, unknown 47.6
1995 Male, age 72, unknown 43.3
Ventral tegmental area
nTPM: 55.5
2410 Female, age 72, unknown 65.2
1915 Female, age 42, unknown 61.0
2218 Male, age 76, both hemispheres 57.2
1942 Male, age 51, unknown 56.7
2223 Female, age 72, unknown 46.6
2021 Male, age 53, unknown 46.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.0
Samples: 139

Max nTPM: 22.4
Min nTPM: 3.8
Std nTPM: 2.6
Median nTPM: 7.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 22.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 18.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 16.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 14.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 14.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 13.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 12.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 12.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 12.3
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 12.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 11.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.8
FF:10158-103A5 76 years, female 39.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.6
Samples: 4

Max nTPM: 45.7
Min nTPM: 25.2
Sample A Female 45.7
Sample B Female 27.6
Sample C Male 44.0
Sample D Male 25.2
Midbrain
nTPM: 43.8
Samples: 4

Max nTPM: 65.1
Min nTPM: 24.9
Sample A Female 24.9
Sample B Female 37.4
Sample C Male 65.1
Sample D Male 47.7
Periaqueductal gray
nTPM: 37.7
Samples: 3

Max nTPM: 43.9
Min nTPM: 34.2
Sample B Female 35.0
Sample C Male 43.9
Sample D Male 34.2
Superior colliculi
nTPM: 45.6
Samples: 4

Max nTPM: 62.2
Min nTPM: 25.9
Sample A Female 46.7
Sample B Female 25.9
Sample C Male 62.2
Sample D Male 47.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.9
Samples: 4

Max nTPM: 39.6
Min nTPM: 26.9
Sample A Male 26.9
Sample B Male 39.6
Sample C Female 38.7
Sample D Female 38.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
75147759 Antisense, RP_051121_03_F08, Mouse strain C57BL/6J (56 days, male) 4.4
74276890 Antisense, RP_051121_03_F08, Mouse strain C57BL/6J (56 days, male) 0.7
73927613 Antisense, RP_051219_01_E06, Mouse strain C57BL/6J (56 days, male) 0.3

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