MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.9 nTPM
HPA Brain:11.8 nTPM
GTEx:4.9 nTPM
FANTOM5:12.5 Scaled Tags Per Million
Pig:12.9 nTPM
Mouse:7.0 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.7
2586 Male, age 75, left hemisphere 13.8
2219 Male, age 76, both hemispheres 12.2
2666 Male, age 74, left hemisphere 12.0
2828 Female, age 72, unknown 11.9
2019 Male, age 18, unknown 11.7
1830 Male, age 51, unknown 11.5
1833 Male, age 53, unknown 11.3
1870 Female, age 42, unknown 11.2
1827 Male, age 72, unknown 10.7
2411 Female, age 72, unknown 10.4
Dorsal raphe nucleus
nTPM: 9.4
2750 Male, age 76, both hemispheres 10.7
2016 Female, age 72, unknown 9.9
2047 Male, age 72, unknown 9.7
1828 Male, age 53, unknown 9.6
2298 Female, age 72, unknown 7.2
Inferior colliculus
nTPM: 10.6
1890 Male, age 53, unknown 11.1
2849 Male, age 72, unknown 10.7
1848 Female, age 42, unknown 10.5
2097 Female, age 72, unknown 10.1
Median raphe nucleus
nTPM: 10.7
2220 Male, age 76, midline 10.7
Periaquaductal grey, anterior
nTPM: 10.2
1947 Male, age 18, unknown 11.1
1795 Male, age 51, unknown 9.9
2502 Female, age 75, unknown 9.8
Periaquaductal grey, dorsal
nTPM: 9.7
1831 Male, age 72, unknown 10.2
2850 Male, age 76, both hemispheres 9.8
2464 Female, age 72, unknown 9.7
1840 Male, age 53, unknown 9.1
Periaquaductal grey, lateral
nTPM: 10.1
2053 Male, age 18, unknown 10.8
2140 Male, age 76, both hemispheres 10.3
2272 Male, age 74, both hemispheres 9.2
Pretectal area
nTPM: 10.7
1815 Male, age 53, unknown 11.9
2407 Male, age 75, both hemispheres 11.9
2007 Male, age 72, unknown 11.4
1816 Male, age 51, unknown 11.1
1817 Female, age 42, unknown 11.1
2316 Male, age 76, right hemisphere 10.9
1944 Female, age 72, unknown 10.4
2825 Male, age 18, unknown 10.4
2667 Female, age 75, unknown 9.9
2273 Male, age 74, both hemispheres 9.2
2224 Female, age 72, unknown 9.1
Red nucleus
nTPM: 11.8
2584 Male, age 75, left hemisphere 13.2
1865 Male, age 51, unknown 12.6
2503 Female, age 72, unknown 12.4
2725 Female, age 75, unknown 12.2
1904 Male, age 53, unknown 12.1
2785 Male, age 18, unknown 11.8
2769 Male, age 72, unknown 11.6
1954 Female, age 42, unknown 11.4
2227 Male, age 72, unknown 11.3
2588 Male, age 74, left hemisphere 11.3
2823 Male, age 76, right hemisphere 11.0
1821 Female, age 72, unknown 10.8
Substantia nigra
nTPM: 11.2
2583 Male, age 75, right hemisphere 12.6
2590 Female, age 75, unknown 12.3
2409 Female, age 72, unknown 12.2
2665 Male, age 74, both hemispheres 12.0
1889 Female, age 72, unknown 11.3
1851 Male, age 51, unknown 10.8
2699 Male, age 18, unknown 10.8
1916 Female, age 42, unknown 10.5
2241 Male, age 72, unknown 9.9
1941 Male, age 53, unknown 9.4
Superior colliculus
nTPM: 10.9
1913 Female, age 42, unknown 12.2
1995 Male, age 72, unknown 11.8
2587 Male, age 74, left hemisphere 11.6
2664 Male, age 75, both hemispheres 11.4
1895 Male, age 76, right hemisphere 10.9
1796 Male, age 53, unknown 10.7
2668 Female, age 75, unknown 10.7
1839 Male, age 51, unknown 10.5
2261 Male, age 18, unknown 9.9
2087 Female, age 72, unknown 9.6
Ventral tegmental area
nTPM: 10.0
2021 Male, age 53, unknown 10.8
2223 Female, age 72, unknown 10.5
1942 Male, age 51, unknown 10.0
2218 Male, age 76, both hemispheres 9.9
2410 Female, age 72, unknown 9.5
1915 Female, age 42, unknown 9.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.9
Samples: 139

Max nTPM: 8.9
Min nTPM: 2.8
Std nTPM: 1.0
Median nTPM: 4.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 8.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 7.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 7.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 7.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 6.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 6.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 6.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 6.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 6.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 6.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 6.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.5
FF:10158-103A5 76 years, female 12.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.9
Samples: 4

Max nTPM: 14.0
Min nTPM: 12.0
Sample A Female 12.0
Sample B Female 13.3
Sample C Male 12.3
Sample D Male 14.0
Midbrain
nTPM: 12.8
Samples: 4

Max nTPM: 13.6
Min nTPM: 11.8
Sample A Female 13.6
Sample B Female 13.4
Sample C Male 12.5
Sample D Male 11.8
Periaqueductal gray
nTPM: 12.3
Samples: 3

Max nTPM: 13.2
Min nTPM: 11.7
Sample B Female 13.2
Sample C Male 12.0
Sample D Male 11.7
Superior colliculi
nTPM: 12.1
Samples: 4

Max nTPM: 12.9
Min nTPM: 11.4
Sample A Female 11.4
Sample B Female 12.1
Sample C Male 12.9
Sample D Male 12.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.0
Samples: 4

Max nTPM: 7.9
Min nTPM: 6.5
Sample A Male 6.5
Sample B Male 7.0
Sample C Female 7.9
Sample D Female 6.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
68745143 Antisense, RP_050210_01_C11, Mouse strain C57BL/6J (56 days, male) 1.5

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