MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.3 nTPM
HPA Brain:26.3 nTPM
GTEx:8.3 nTPM
FANTOM5:71.4 Scaled Tags Per Million
Pig:25.4 nTPM
Mouse:26.9 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.2
2586 Male, age 75, left hemisphere 28.1
2219 Male, age 76, both hemispheres 26.3
2019 Male, age 18, unknown 25.4
1830 Male, age 51, unknown 22.4
1870 Female, age 42, unknown 22.2
1827 Male, age 72, unknown 22.1
2411 Female, age 72, unknown 22.0
2666 Male, age 74, left hemisphere 22.0
1833 Male, age 53, unknown 21.2
2828 Female, age 72, unknown 20.0
Dorsal raphe nucleus
nTPM: 21.4
1828 Male, age 53, unknown 22.7
2047 Male, age 72, unknown 22.4
2016 Female, age 72, unknown 21.8
2750 Male, age 76, both hemispheres 21.0
2298 Female, age 72, unknown 18.9
Inferior colliculus
nTPM: 22.5
1890 Male, age 53, unknown 27.7
2097 Female, age 72, unknown 24.4
1848 Female, age 42, unknown 20.1
2849 Male, age 72, unknown 17.7
Median raphe nucleus
nTPM: 23.8
2220 Male, age 76, midline 23.8
Periaquaductal grey, anterior
nTPM: 21.1
2502 Female, age 75, unknown 25.6
1947 Male, age 18, unknown 19.1
1795 Male, age 51, unknown 18.5
Periaquaductal grey, dorsal
nTPM: 20.9
1831 Male, age 72, unknown 23.9
2464 Female, age 72, unknown 22.9
2850 Male, age 76, both hemispheres 19.2
1840 Male, age 53, unknown 17.4
Periaquaductal grey, lateral
nTPM: 18.8
2053 Male, age 18, unknown 20.9
2140 Male, age 76, both hemispheres 19.2
2272 Male, age 74, both hemispheres 16.2
Pretectal area
nTPM: 22.8
1944 Female, age 72, unknown 28.1
1816 Male, age 51, unknown 27.0
1815 Male, age 53, unknown 25.7
1817 Female, age 42, unknown 25.6
2007 Male, age 72, unknown 25.2
2667 Female, age 75, unknown 22.5
2316 Male, age 76, right hemisphere 20.3
2224 Female, age 72, unknown 19.9
2407 Male, age 75, both hemispheres 19.9
2825 Male, age 18, unknown 18.2
2273 Male, age 74, both hemispheres 18.1
Red nucleus
nTPM: 23.4
1821 Female, age 72, unknown 26.4
1954 Female, age 42, unknown 25.9
1904 Male, age 53, unknown 24.9
2503 Female, age 72, unknown 24.6
2785 Male, age 18, unknown 24.6
2823 Male, age 76, right hemisphere 24.6
1865 Male, age 51, unknown 24.2
2588 Male, age 74, left hemisphere 23.3
2584 Male, age 75, left hemisphere 21.8
2227 Male, age 72, unknown 21.0
2769 Male, age 72, unknown 20.0
2725 Female, age 75, unknown 19.9
Substantia nigra
nTPM: 26.3
2241 Male, age 72, unknown 33.2
2409 Female, age 72, unknown 30.3
1916 Female, age 42, unknown 29.4
1889 Female, age 72, unknown 27.1
1851 Male, age 51, unknown 26.3
1941 Male, age 53, unknown 24.5
2699 Male, age 18, unknown 24.2
2583 Male, age 75, right hemisphere 23.6
2665 Male, age 74, both hemispheres 23.2
2590 Female, age 75, unknown 21.7
Superior colliculus
nTPM: 22.4
2087 Female, age 72, unknown 26.0
2668 Female, age 75, unknown 25.5
2261 Male, age 18, unknown 25.0
2664 Male, age 75, both hemispheres 23.6
1995 Male, age 72, unknown 21.7
1913 Female, age 42, unknown 21.2
2587 Male, age 74, left hemisphere 21.1
1796 Male, age 53, unknown 20.2
1839 Male, age 51, unknown 19.9
1895 Male, age 76, right hemisphere 19.5
Ventral tegmental area
nTPM: 23.1
2410 Female, age 72, unknown 24.1
1942 Male, age 51, unknown 23.9
1915 Female, age 42, unknown 23.8
2218 Male, age 76, both hemispheres 22.8
2223 Female, age 72, unknown 22.1
2021 Male, age 53, unknown 21.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.3
Samples: 139

Max nTPM: 12.4
Min nTPM: 5.2
Std nTPM: 1.4
Median nTPM: 8.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 12.4
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 11.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 11.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 11.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 11.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 11.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 11.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 11.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 11.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 11.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 11.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.4
FF:10158-103A5 76 years, female 71.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.8
Samples: 4

Max nTPM: 26.2
Min nTPM: 20.6
Sample A Female 25.5
Sample B Female 23.0
Sample C Male 26.2
Sample D Male 20.6
Midbrain
nTPM: 25.4
Samples: 4

Max nTPM: 30.2
Min nTPM: 22.2
Sample A Female 30.2
Sample B Female 22.8
Sample C Male 26.4
Sample D Male 22.2
Periaqueductal gray
nTPM: 21.0
Samples: 3

Max nTPM: 22.0
Min nTPM: 20.1
Sample B Female 21.0
Sample C Male 22.0
Sample D Male 20.1
Superior colliculi
nTPM: 22.4
Samples: 4

Max nTPM: 24.2
Min nTPM: 20.0
Sample A Female 24.2
Sample B Female 22.9
Sample C Male 22.5
Sample D Male 20.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.9
Samples: 4

Max nTPM: 27.5
Min nTPM: 25.5
Sample A Male 25.5
Sample B Male 27.5
Sample C Female 27.5
Sample D Female 27.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
70231164 Antisense, RP_050526_01_D12, Mouse strain C57BL/6J (56 days, male) 0.9
73716752 Antisense, RP_051212_01_B02, Mouse strain C57BL/6J (56 days, male) 0.0

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