MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:216.3 nTPM
HPA Brain:61.6 nTPM
GTEx:216.3 nTPM
FANTOM5:115.3 Scaled Tags Per Million
Pig:110.2 nTPM
Mouse:228.4 nTPM
Allen mouse:7.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.7
1827 Male, age 72, unknown 65.8
2666 Male, age 74, left hemisphere 61.6
1870 Female, age 42, unknown 53.5
2411 Female, age 72, unknown 51.8
2019 Male, age 18, unknown 48.7
2828 Female, age 72, unknown 47.7
2219 Male, age 76, both hemispheres 46.8
2586 Male, age 75, left hemisphere 45.8
1833 Male, age 53, unknown 45.4
1830 Male, age 51, unknown 40.1
Dorsal raphe nucleus
nTPM: 52.4
2298 Female, age 72, unknown 61.8
1828 Male, age 53, unknown 53.8
2047 Male, age 72, unknown 52.7
2750 Male, age 76, both hemispheres 52.1
2016 Female, age 72, unknown 41.5
Inferior colliculus
nTPM: 55.4
2097 Female, age 72, unknown 63.6
2849 Male, age 72, unknown 55.6
1890 Male, age 53, unknown 52.1
1848 Female, age 42, unknown 50.4
Median raphe nucleus
nTPM: 61.6
2220 Male, age 76, midline 61.6
Periaquaductal grey, anterior
nTPM: 52.6
1947 Male, age 18, unknown 59.3
1795 Male, age 51, unknown 53.7
2502 Female, age 75, unknown 44.8
Periaquaductal grey, dorsal
nTPM: 46.5
2850 Male, age 76, both hemispheres 51.4
1840 Male, age 53, unknown 48.8
1831 Male, age 72, unknown 48.3
2464 Female, age 72, unknown 37.6
Periaquaductal grey, lateral
nTPM: 47.9
2053 Male, age 18, unknown 49.4
2272 Male, age 74, both hemispheres 48.2
2140 Male, age 76, both hemispheres 46.0
Pretectal area
nTPM: 61.2
1816 Male, age 51, unknown 82.9
1817 Female, age 42, unknown 74.0
1944 Female, age 72, unknown 73.6
2007 Male, age 72, unknown 71.5
1815 Male, age 53, unknown 67.9
2667 Female, age 75, unknown 61.1
2224 Female, age 72, unknown 55.2
2825 Male, age 18, unknown 52.2
2407 Male, age 75, both hemispheres 48.9
2273 Male, age 74, both hemispheres 45.8
2316 Male, age 76, right hemisphere 39.9
Red nucleus
nTPM: 47.9
1821 Female, age 72, unknown 61.9
2725 Female, age 75, unknown 60.6
2785 Male, age 18, unknown 49.2
1865 Male, age 51, unknown 48.3
1954 Female, age 42, unknown 48.1
2823 Male, age 76, right hemisphere 46.8
2503 Female, age 72, unknown 46.0
2584 Male, age 75, left hemisphere 45.5
2769 Male, age 72, unknown 43.6
1904 Male, age 53, unknown 42.7
2227 Male, age 72, unknown 41.7
2588 Male, age 74, left hemisphere 40.3
Substantia nigra
nTPM: 61.6
1916 Female, age 42, unknown 79.0
1889 Female, age 72, unknown 70.7
1941 Male, age 53, unknown 70.1
2665 Male, age 74, both hemispheres 68.7
1851 Male, age 51, unknown 66.1
2241 Male, age 72, unknown 55.7
2699 Male, age 18, unknown 55.2
2409 Female, age 72, unknown 53.4
2590 Female, age 75, unknown 48.8
2583 Male, age 75, right hemisphere 48.3
Superior colliculus
nTPM: 51.7
2087 Female, age 72, unknown 58.9
2668 Female, age 75, unknown 57.3
1796 Male, age 53, unknown 55.2
2261 Male, age 18, unknown 55.0
2587 Male, age 74, left hemisphere 55.0
1895 Male, age 76, right hemisphere 53.7
1913 Female, age 42, unknown 49.8
1839 Male, age 51, unknown 45.7
2664 Male, age 75, both hemispheres 44.8
1995 Male, age 72, unknown 41.4
Ventral tegmental area
nTPM: 56.3
2218 Male, age 76, both hemispheres 65.8
1915 Female, age 42, unknown 63.2
2410 Female, age 72, unknown 59.3
2223 Female, age 72, unknown 52.5
1942 Male, age 51, unknown 49.8
2021 Male, age 53, unknown 47.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 216.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 216.3
Samples: 139

Max nTPM: 425.1
Min nTPM: 122.8
Std nTPM: 59.5
Median nTPM: 203.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 425.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 416.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 396.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 386.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 362.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 348.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 337.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 328.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 325.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 323.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 306.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.3
FF:10158-103A5 76 years, female 115.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 110.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 101.0
Samples: 4

Max nTPM: 143.6
Min nTPM: 66.9
Sample A Female 143.6
Sample B Female 84.4
Sample C Male 108.9
Sample D Male 66.9
Midbrain
nTPM: 104.4
Samples: 4

Max nTPM: 107.1
Min nTPM: 100.1
Sample A Female 107.1
Sample B Female 100.1
Sample C Male 106.0
Sample D Male 104.3
Periaqueductal gray
nTPM: 81.8
Samples: 3

Max nTPM: 98.4
Min nTPM: 69.9
Sample B Female 77.0
Sample C Male 98.4
Sample D Male 69.9
Superior colliculi
nTPM: 110.2
Samples: 4

Max nTPM: 140.6
Min nTPM: 91.3
Sample A Female 140.6
Sample B Female 92.2
Sample C Male 116.7
Sample D Male 91.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 228.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 228.5
Samples: 4

Max nTPM: 238.3
Min nTPM: 218.5
Sample A Male 235.5
Sample B Male 221.5
Sample C Female 218.5
Sample D Female 238.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.3
393259 Antisense, RP_040809_01_B01, Mouse strain C57BL/6J (56 days, male) 7.3

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