HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:19.6 nTPM
HPA Brain:65.3 nTPM
GTEx:19.6 nTPM
FANTOM5:83.9 Scaled Tags Per Million
Pig:57.4 nTPM
Mouse:176.4 nTPM
Allen mouse:12.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA015590Antibody HPA019728
Glial cells MediumLow
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 65.3
Sample id Sample description nTPM
Hippocampus
nTPM: 45.5
1898 Male, age 80, left hemisphere 62.3
1855 Male, age 76, left hemisphere 53.8
1911 Female, age 85, right hemisphere 44.3
2621 Female, age 67, right hemisphere 40.8
2529 Female, age 94, left hemisphere 37.7
2148 Female, age 91, left hemisphere 34.0
Dentate gyrus
nTPM: 48.5
1927 Female, age 91, both hemispheres 61.3
2010 Male, age 76, both hemispheres 61.0
2246 Female, age 85, both hemispheres 47.3
2530 Female, age 94, left hemisphere 42.8
2528 Male, age 74, both hemispheres 42.3
2531 Female, age 67, both hemispheres 36.5
Entorhinal gyrus
nTPM: 43.4
1938 Female, age 85, left hemisphere 54.9
1787 Male, age 76, left hemisphere 48.9
2764 Male, age 80, right hemisphere 44.6
2613 Female, age 94, left hemisphere 43.2
2117 Female, age 91, right hemisphere 37.2
2686 Male, age 75, right hemisphere 31.7
Hippocampus, CA1
nTPM: 56.6
2749 Male, age 80, left hemisphere 81.9
1873 Female, age 85, both hemispheres 62.5
2045 Male, age 76, both hemispheres 55.5
2527 Male, age 74, both hemispheres 46.7
2082 Female, age 91, right hemisphere 36.2
Hippocampus, CA2
nTPM: 53.1
1892 Male, age 76, both hemispheres 81.5
1963 Male, age 80, left hemisphere 61.8
2249 Male, age 74, both hemispheres 49.8
1940 Female, age 85, left hemisphere 44.0
2437 Female, age 94, left hemisphere 42.2
2113 Female, age 91, right hemisphere 39.1
Hippocampus, CA3
nTPM: 51.8
2137 Male, age 80, left hemisphere 77.2
1867 Male, age 76, both hemispheres 64.6
2436 Male, age 74, both hemispheres 54.0
1891 Female, age 85, both hemispheres 47.9
2620 Female, age 94, left hemisphere 35.4
2861 Female, age 67, both hemispheres 31.9
Parahippocampal cortex
nTPM: 48.2
1850 Male, age 80, both hemispheres 75.7
1990 Female, age 91, right hemisphere 57.4
2693 Female, age 94, both hemispheres 55.0
2018 Male, age 76, both hemispheres 51.1
1933 Female, age 85, both hemispheres 50.6
2250 Female, age 67, right hemisphere 46.2
2532 Female, age 72, left hemisphere 46.0
2245 Female, age 91, both hemispheres 39.9
2692 Male, age 74, both hemispheres 33.6
2622 Female, age 67, right hemisphere 26.8
Perirhinal gyrus
nTPM: 65.3
1794 Male, age 80, right hemisphere 73.8
1841 Female, age 85, right hemisphere 70.5
1847 Female, age 91, left hemisphere 69.9
2848 Male, age 76, right hemisphere 58.8
2521 Female, age 94, right hemisphere 53.3
Subiculum
nTPM: 46.5
1901 Male, age 80, both hemispheres 58.3
1977 Female, age 85, both hemispheres 52.2
2042 Male, age 76, both hemispheres 49.4
2438 Female, age 94, left hemisphere 46.1
2619 Male, age 74, both hemispheres 38.5
2729 Female, age 91, right hemisphere 34.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 19.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.6
Samples: 197

Max nTPM: 53.3
Min nTPM: 4.8
Std nTPM: 9.3
Median nTPM: 17.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 53.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 44.0
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 43.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 41.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 41.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 40.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 40.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 40.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 40.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 40.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 39.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 83.9
FF:10169-103B7 60 years, female 109.0
FF:10153-102I9 76 years, female 58.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 57.4
Pig sample Sample description nTPM
Subiculum
nTPM: 48.9
Samples: 4

Max nTPM: 56.7
Min nTPM: 43.6
Sample A Female 56.7
Sample B Female 43.6
Sample C Male 49.5
Sample D Male 45.6
Dorsal hippocampus
nTPM: 54.0
Samples: 4

Max nTPM: 61.8
Min nTPM: 40.9
Sample A Female 61.8
Sample B Female 57.9
Sample C Male 55.4
Sample D Male 40.9
Entorhinal cortex
nTPM: 57.4
Samples: 4

Max nTPM: 64.5
Min nTPM: 53.2
Sample A Female 58.7
Sample B Female 64.5
Sample C Male 53.3
Sample D Male 53.2
Ventral hippocampus
nTPM: 50.3
Samples: 4

Max nTPM: 55.9
Min nTPM: 40.7
Sample A Female 55.9
Sample B Female 40.7
Sample C Male 50.1
Sample D Male 54.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 176.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 176.5
Samples: 4

Max nTPM: 185.6
Min nTPM: 165.9
Sample A Male 165.9
Sample B Male 185.6
Sample C Female 170.1
Sample D Female 184.3
Hippocampal formation
nTPM: 171.8
Samples: 4

Max nTPM: 181.2
Min nTPM: 160.2
Sample A Male 181.2
Sample B Male 170.7
Sample C Female 175.0
Sample D Female 160.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.5
112194079 Antisense, RP_110421_01_E06, Mouse strain C57BL/6J (56 days, male) 18.9
2140 Antisense, RP_040324_01_C12, Mouse strain C57BL/6J (56 days, male) 6.0

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