MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.7 nTPM
HPA Brain:46.6 nTPM
GTEx:15.7 nTPM
FANTOM5:58.2 Scaled Tags Per Million
Pig:60.2 nTPM
Mouse:203.5 nTPM
Allen mouse:12.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.1
1827 Male, age 72, unknown 48.6
2411 Female, age 72, unknown 44.7
1870 Female, age 42, unknown 42.9
2019 Male, age 18, unknown 40.3
2666 Male, age 74, left hemisphere 38.4
2219 Male, age 76, both hemispheres 38.3
1830 Male, age 51, unknown 36.5
1833 Male, age 53, unknown 36.4
2828 Female, age 72, unknown 34.8
2586 Male, age 75, left hemisphere 29.9
Dorsal raphe nucleus
nTPM: 40.6
2298 Female, age 72, unknown 52.2
2750 Male, age 76, both hemispheres 42.3
2047 Male, age 72, unknown 37.4
1828 Male, age 53, unknown 36.6
2016 Female, age 72, unknown 34.7
Inferior colliculus
nTPM: 41.7
2097 Female, age 72, unknown 53.6
1848 Female, age 42, unknown 39.2
1890 Male, age 53, unknown 37.7
2849 Male, age 72, unknown 36.2
Median raphe nucleus
nTPM: 46.6
2220 Male, age 76, midline 46.6
Periaquaductal grey, anterior
nTPM: 44.2
1947 Male, age 18, unknown 50.8
1795 Male, age 51, unknown 42.5
2502 Female, age 75, unknown 39.3
Periaquaductal grey, dorsal
nTPM: 37.1
1840 Male, age 53, unknown 40.5
2464 Female, age 72, unknown 37.3
1831 Male, age 72, unknown 36.2
2850 Male, age 76, both hemispheres 34.3
Periaquaductal grey, lateral
nTPM: 38.6
2272 Male, age 74, both hemispheres 43.5
2053 Male, age 18, unknown 42.7
2140 Male, age 76, both hemispheres 29.7
Pretectal area
nTPM: 46.3
1816 Male, age 51, unknown 61.7
2007 Male, age 72, unknown 56.0
1815 Male, age 53, unknown 50.9
1817 Female, age 42, unknown 50.5
1944 Female, age 72, unknown 50.5
2224 Female, age 72, unknown 46.8
2273 Male, age 74, both hemispheres 46.3
2667 Female, age 75, unknown 41.2
2825 Male, age 18, unknown 37.8
2316 Male, age 76, right hemisphere 34.3
2407 Male, age 75, both hemispheres 33.3
Red nucleus
nTPM: 33.3
2725 Female, age 75, unknown 43.3
1821 Female, age 72, unknown 40.4
2503 Female, age 72, unknown 35.4
2785 Male, age 18, unknown 35.1
1865 Male, age 51, unknown 33.3
1954 Female, age 42, unknown 32.7
2584 Male, age 75, left hemisphere 31.6
2588 Male, age 74, left hemisphere 31.2
1904 Male, age 53, unknown 30.1
2823 Male, age 76, right hemisphere 29.8
2227 Male, age 72, unknown 28.4
2769 Male, age 72, unknown 28.4
Substantia nigra
nTPM: 40.8
2241 Male, age 72, unknown 55.2
2409 Female, age 72, unknown 45.5
1889 Female, age 72, unknown 45.2
1916 Female, age 42, unknown 45.1
1941 Male, age 53, unknown 42.7
1851 Male, age 51, unknown 40.6
2583 Male, age 75, right hemisphere 37.1
2590 Female, age 75, unknown 36.8
2665 Male, age 74, both hemispheres 33.6
2699 Male, age 18, unknown 26.2
Superior colliculus
nTPM: 40.2
2261 Male, age 18, unknown 51.0
1796 Male, age 53, unknown 45.0
1895 Male, age 76, right hemisphere 43.8
2087 Female, age 72, unknown 43.7
2668 Female, age 75, unknown 40.9
2587 Male, age 74, left hemisphere 40.5
1913 Female, age 42, unknown 38.9
1839 Male, age 51, unknown 35.8
1995 Male, age 72, unknown 31.4
2664 Male, age 75, both hemispheres 30.7
Ventral tegmental area
nTPM: 41.0
2410 Female, age 72, unknown 47.3
2218 Male, age 76, both hemispheres 42.8
1915 Female, age 42, unknown 40.9
2223 Female, age 72, unknown 40.3
2021 Male, age 53, unknown 38.6
1942 Male, age 51, unknown 35.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.7
Samples: 139

Max nTPM: 43.3
Min nTPM: 0.9
Std nTPM: 6.5
Median nTPM: 14.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 43.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 38.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 37.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 36.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 30.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 28.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 26.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 26.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 25.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 24.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 24.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.2
FF:10158-103A5 76 years, female 58.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.0
Samples: 4

Max nTPM: 53.6
Min nTPM: 27.6
Sample A Female 53.6
Sample B Female 36.8
Sample C Male 50.1
Sample D Male 27.6
Midbrain
nTPM: 60.3
Samples: 4

Max nTPM: 97.1
Min nTPM: 40.0
Sample A Female 41.7
Sample B Female 40.0
Sample C Male 97.1
Sample D Male 62.2
Periaqueductal gray
nTPM: 35.8
Samples: 3

Max nTPM: 40.1
Min nTPM: 33.6
Sample B Female 33.6
Sample C Male 40.1
Sample D Male 33.6
Superior colliculi
nTPM: 59.2
Samples: 4

Max nTPM: 88.1
Min nTPM: 43.7
Sample A Female 52.6
Sample B Female 43.7
Sample C Male 88.1
Sample D Male 52.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 203.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 203.5
Samples: 4

Max nTPM: 213.3
Min nTPM: 189.3
Sample A Male 189.3
Sample B Male 213.3
Sample C Female 211.0
Sample D Female 200.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.3
112194079 Antisense, RP_110421_01_E06, Mouse strain C57BL/6J (56 days, male) 19.5
2140 Antisense, RP_040324_01_C12, Mouse strain C57BL/6J (56 days, male) 5.1

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