MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.0 nTPM
HPA Brain:37.4 nTPM
GTEx:5.0 nTPM
FANTOM5:14.1 Scaled Tags Per Million
Pig:29.5 nTPM
Mouse:15.8 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.0
2411 Female, age 72, unknown 32.6
1870 Female, age 42, unknown 32.4
1830 Male, age 51, unknown 31.5
2828 Female, age 72, unknown 31.3
1827 Male, age 72, unknown 29.2
1833 Male, age 53, unknown 27.9
2586 Male, age 75, left hemisphere 27.3
2666 Male, age 74, left hemisphere 23.5
2019 Male, age 18, unknown 19.8
2219 Male, age 76, both hemispheres 14.2
Dorsal raphe nucleus
nTPM: 27.8
2047 Male, age 72, unknown 34.9
2750 Male, age 76, both hemispheres 30.2
2298 Female, age 72, unknown 28.5
1828 Male, age 53, unknown 23.8
2016 Female, age 72, unknown 21.8
Inferior colliculus
nTPM: 24.4
1848 Female, age 42, unknown 30.4
2849 Male, age 72, unknown 29.0
1890 Male, age 53, unknown 20.2
2097 Female, age 72, unknown 18.0
Median raphe nucleus
nTPM: 37.4
2220 Male, age 76, midline 37.4
Periaquaductal grey, anterior
nTPM: 31.4
1947 Male, age 18, unknown 39.5
2502 Female, age 75, unknown 28.1
1795 Male, age 51, unknown 26.6
Periaquaductal grey, dorsal
nTPM: 29.4
2850 Male, age 76, both hemispheres 47.6
2464 Female, age 72, unknown 27.6
1831 Male, age 72, unknown 23.0
1840 Male, age 53, unknown 19.5
Periaquaductal grey, lateral
nTPM: 37.4
2140 Male, age 76, both hemispheres 50.6
2053 Male, age 18, unknown 35.7
2272 Male, age 74, both hemispheres 25.8
Pretectal area
nTPM: 24.6
2825 Male, age 18, unknown 33.3
2316 Male, age 76, right hemisphere 32.4
2407 Male, age 75, both hemispheres 27.3
2007 Male, age 72, unknown 25.6
1815 Male, age 53, unknown 24.4
2224 Female, age 72, unknown 24.1
2273 Male, age 74, both hemispheres 23.4
2667 Female, age 75, unknown 21.6
1817 Female, age 42, unknown 21.2
1816 Male, age 51, unknown 20.1
1944 Female, age 72, unknown 17.5
Red nucleus
nTPM: 23.5
1865 Male, age 51, unknown 31.9
2588 Male, age 74, left hemisphere 26.6
1904 Male, age 53, unknown 24.6
2725 Female, age 75, unknown 24.6
2785 Male, age 18, unknown 24.5
1821 Female, age 72, unknown 24.2
2227 Male, age 72, unknown 23.6
2769 Male, age 72, unknown 23.2
2503 Female, age 72, unknown 22.1
2823 Male, age 76, right hemisphere 21.6
1954 Female, age 42, unknown 20.3
2584 Male, age 75, left hemisphere 14.5
Substantia nigra
nTPM: 14.5
1916 Female, age 42, unknown 23.0
1941 Male, age 53, unknown 20.9
1889 Female, age 72, unknown 19.1
2590 Female, age 75, unknown 17.3
2665 Male, age 74, both hemispheres 16.0
2583 Male, age 75, right hemisphere 11.5
1851 Male, age 51, unknown 10.4
2241 Male, age 72, unknown 9.5
2699 Male, age 18, unknown 8.7
2409 Female, age 72, unknown 8.3
Superior colliculus
nTPM: 25.8
1839 Male, age 51, unknown 31.5
2664 Male, age 75, both hemispheres 29.2
2261 Male, age 18, unknown 28.0
2587 Male, age 74, left hemisphere 28.0
1796 Male, age 53, unknown 27.8
1895 Male, age 76, right hemisphere 25.9
2668 Female, age 75, unknown 23.5
1995 Male, age 72, unknown 23.3
1913 Female, age 42, unknown 21.2
2087 Female, age 72, unknown 20.0
Ventral tegmental area
nTPM: 23.6
2223 Female, age 72, unknown 31.2
2218 Male, age 76, both hemispheres 26.8
2021 Male, age 53, unknown 24.0
2410 Female, age 72, unknown 21.4
1942 Male, age 51, unknown 20.6
1915 Female, age 42, unknown 17.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.0
Samples: 139

Max nTPM: 23.5
Min nTPM: 0.8
Std nTPM: 4.1
Median nTPM: 3.7
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 23.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 19.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 18.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 18.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 17.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 17.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 16.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 15.7
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 11.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 11.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 10.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.1
FF:10158-103A5 76 years, female 14.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.5
Samples: 4

Max nTPM: 32.9
Min nTPM: 25.7
Sample A Female 32.9
Sample B Female 25.7
Sample C Male 29.1
Sample D Male 30.4
Midbrain
nTPM: 26.4
Samples: 4

Max nTPM: 41.6
Min nTPM: 18.7
Sample A Female 41.6
Sample B Female 25.5
Sample C Male 18.7
Sample D Male 19.8
Periaqueductal gray
nTPM: 26.2
Samples: 3

Max nTPM: 27.8
Min nTPM: 24.7
Sample B Female 24.7
Sample C Male 27.8
Sample D Male 26.1
Superior colliculi
nTPM: 24.6
Samples: 4

Max nTPM: 27.8
Min nTPM: 19.9
Sample A Female 25.1
Sample B Female 27.8
Sample C Male 19.9
Sample D Male 25.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 17.8
Min nTPM: 12.4
Sample A Male 17.8
Sample B Male 17.2
Sample C Female 12.4
Sample D Female 15.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
1767 Antisense, RP_040507_02_D05, Mouse strain C57BL/6J (56 days, male) 0.4
1766 Antisense, RP_040507_02_D05, Mouse strain C57BL/6J (56 days, male) 0.1

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