HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.7 nTPM
HPA Brain:25.3 nTPM
GTEx:13.7 nTPM
FANTOM5:16.8 Scaled Tags Per Million
Pig:17.2 nTPM
Mouse:28.0 nTPM
Allen mouse:5.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - Antibody stainingi
Antibody HPA023255
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 25.3
Sample id Sample description nTPM
Hippocampus
nTPM: 21.6
1898 Male, age 80, left hemisphere 25.5
2148 Female, age 91, left hemisphere 24.5
2621 Female, age 67, right hemisphere 22.9
1855 Male, age 76, left hemisphere 20.2
2529 Female, age 94, left hemisphere 18.6
1911 Female, age 85, right hemisphere 18.0
Dentate gyrus
nTPM: 25.3
2530 Female, age 94, left hemisphere 37.9
2528 Male, age 74, both hemispheres 24.6
1927 Female, age 91, both hemispheres 24.0
2531 Female, age 67, both hemispheres 23.4
2010 Male, age 76, both hemispheres 22.0
2246 Female, age 85, both hemispheres 19.7
Entorhinal gyrus
nTPM: 21.5
2613 Female, age 94, left hemisphere 24.0
2764 Male, age 80, right hemisphere 24.0
2117 Female, age 91, right hemisphere 21.8
1787 Male, age 76, left hemisphere 20.2
2686 Male, age 75, right hemisphere 19.9
1938 Female, age 85, left hemisphere 18.9
Hippocampus, CA1
nTPM: 20.6
2749 Male, age 80, left hemisphere 26.6
1873 Female, age 85, both hemispheres 24.1
2527 Male, age 74, both hemispheres 19.6
2082 Female, age 91, right hemisphere 16.4
2045 Male, age 76, both hemispheres 16.0
Hippocampus, CA2
nTPM: 22.7
1963 Male, age 80, left hemisphere 29.7
2437 Female, age 94, left hemisphere 27.0
1892 Male, age 76, both hemispheres 25.6
2249 Male, age 74, both hemispheres 19.6
1940 Female, age 85, left hemisphere 17.3
2113 Female, age 91, right hemisphere 17.1
Hippocampus, CA3
nTPM: 21.6
2861 Female, age 67, both hemispheres 31.3
2620 Female, age 94, left hemisphere 23.5
2436 Male, age 74, both hemispheres 20.7
1867 Male, age 76, both hemispheres 19.1
2137 Male, age 80, left hemisphere 19.1
1891 Female, age 85, both hemispheres 15.8
Parahippocampal cortex
nTPM: 18.4
2622 Female, age 67, right hemisphere 22.9
2532 Female, age 72, left hemisphere 20.2
1933 Female, age 85, both hemispheres 19.3
1990 Female, age 91, right hemisphere 19.3
2245 Female, age 91, both hemispheres 18.5
2693 Female, age 94, both hemispheres 17.6
2692 Male, age 74, both hemispheres 17.4
1850 Male, age 80, both hemispheres 17.1
2250 Female, age 67, right hemisphere 16.8
2018 Male, age 76, both hemispheres 14.8
Perirhinal gyrus
nTPM: 18.7
1794 Male, age 80, right hemisphere 21.6
1841 Female, age 85, right hemisphere 19.2
2521 Female, age 94, right hemisphere 19.1
1847 Female, age 91, left hemisphere 17.3
2848 Male, age 76, right hemisphere 16.3
Subiculum
nTPM: 17.9
1977 Female, age 85, both hemispheres 21.1
2729 Female, age 91, right hemisphere 18.7
2619 Male, age 74, both hemispheres 18.2
1901 Male, age 80, both hemispheres 17.5
2438 Female, age 94, left hemisphere 16.2
2042 Male, age 76, both hemispheres 15.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.7
Samples: 197

Max nTPM: 27.7
Min nTPM: 1.8
Std nTPM: 4.2
Median nTPM: 13.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 27.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 25.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 24.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 24.0
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 21.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 21.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 21.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 21.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 21.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 21.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 20.8
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.8
FF:10169-103B7 60 years, female 19.7
FF:10153-102I9 76 years, female 13.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 17.2
Pig sample Sample description nTPM
Subiculum
nTPM: 10.9
Samples: 4

Max nTPM: 13.3
Min nTPM: 9.8
Sample A Female 13.3
Sample B Female 10.2
Sample C Male 10.3
Sample D Male 9.8
Dorsal hippocampus
nTPM: 17.2
Samples: 4

Max nTPM: 26.0
Min nTPM: 11.3
Sample A Female 26.0
Sample B Female 20.1
Sample C Male 11.3
Sample D Male 11.5
Entorhinal cortex
nTPM: 11.9
Samples: 4

Max nTPM: 12.9
Min nTPM: 10.8
Sample A Female 11.1
Sample B Female 12.9
Sample C Male 12.9
Sample D Male 10.8
Ventral hippocampus
nTPM: 13.7
Samples: 4

Max nTPM: 17.7
Min nTPM: 8.2
Sample A Female 14.4
Sample B Female 8.2
Sample C Male 14.5
Sample D Male 17.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 28.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 19.7
Samples: 4

Max nTPM: 23.2
Min nTPM: 14.4
Sample A Male 23.2
Sample B Male 21.4
Sample C Female 19.6
Sample D Female 14.4
Hippocampal formation
nTPM: 28.0
Samples: 4

Max nTPM: 31.1
Min nTPM: 24.9
Sample A Male 24.9
Sample B Male 27.8
Sample C Female 31.1
Sample D Female 28.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.5
70528067 Antisense, RP_050623_01_G03, Mouse strain C57BL/6J (56 days, male) 5.5
72008306 Antisense, RP_050623_01_G03, Mouse strain C57BL/6J (56 days, male) 2.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org